JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KIR2DL3_chr19_54733513_54758052	0/0	c0022	1026	1	1	0	0	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	c0023	1026	1	0	0	1	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	c0024	1037	1	0	0	1	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	c0025	1026	1	0	0	0	1	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	c0026	1026	1	0	0	1	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	c0027	1026	1	0	0	1	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL4_chr19_54798610_54819517	0/0	c0001	1029	124	11	23	72	9	9	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR2DL4_chr19_54798610_54819517	0/0	c0002	1029	114	0	20	82	0	12	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR2DL4_chr19_54798610_54819517	0/1	c0003	1029	65	43	7	7	0	7	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR2DL4_chr19_54798610_54819517	0/0	c0004	1029	37	5	4	13	6	9	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR2DL4_chr19_54798610_54819517	0/0	c0005	1029	28	3	0	22	1	2	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR2DL4_chr19_54798610_54819517	0/0	c0006	1029	21	10	9	0	1	1	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR2DL4_chr19_54798610_54819517	0/0	c0007	1029	7	7	0	0	0	0	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR2DL4_chr19_54798610_54819517	0/0	c0008	1029	3	1	2	0	0	0	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR2DL4_chr19_54798610_54819517	0/0	c0009	1029	2	0	0	2	0	0	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR2DL4_chr19_54798610_54819517	0/0	c0010	1029	2	0	0	2	0	0	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR2DL4_chr19_54798610_54819517	0/0	c0011	1029	1	1	0	0	0	0	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR2DL4_chr19_54798610_54819517	0/0	c0012	1029	1	1	0	0	0	0	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR2DL4_chr19_54798610_54819517	0/0	c0013	1029	1	0	0	1	0	0	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR2DL4_chr19_54798610_54819517	0/0	c0014	1029	1	0	1	0	0	0	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR2DL4_chr19_54798610_54819517	0/0	c0015	1029	1	0	1	0	0	0	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR2DL4_chr19_54798610_54819517	0/0	c0016	1029	1	0	0	0	1	0	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR2DL4_chr19_54798610_54819517	0/0	c0017	1029	1	0	1	0	0	0	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR2DL4_chr19_54798610_54819517	0/0	c0018	1029	1	0	0	1	0	0	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR2DL4_chr19_54798610_54819517	0/0	c0019	1029	1	1	0	0	0	0	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR2DL4_chr19_54798610_54819517	0/0	c0020	1029	1	1	0	0	0	0	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR3DL1_chr19_54811468_54835778	0/1	c0001	1335	113	9	14	81	0	8	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	c0002	1334	60	7	12	34	3	4	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	c0003	1335	43	2	8	27	3	3	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	c0004	1335	33	5	3	11	6	8	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	c0005	1335	24	2	0	20	0	2	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	c0006	1335	18	15	3	0	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	c0007	1335	18	18	0	0	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	c0008	1335	16	8	7	0	1	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	c0009	1335	13	5	2	6	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	c0010	1335	10	0	4	6	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	c0011	1335	8	0	1	0	0	7	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	c0012	1335	4	0	3	0	0	1	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	c0013	1335	3	3	0	0	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	c0014	1335	3	1	2	0	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	c0015	1335	3	2	1	0	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	c0016	1335	2	0	1	0	0	1	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	c0017	1335	2	0	1	0	0	1	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	c0018	1335	2	2	0	0	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	c0019	1335	1	0	0	1	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	c0020	1335	1	0	0	1	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	c0021	949	1	1	0	0	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	c0022	1335	1	0	0	0	0	1	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	c0023	1335	1	0	0	1	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	c0024	1335	1	0	1	0	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778