JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KIR3DL1_chr19_54811468_54835778	0/0	c0025	1335	1	0	0	0	1	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	c0026	1335	1	1	0	0	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	c0027	1335	1	1	0	0	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	c0028	1335	1	0	0	1	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	c0029	1335	1	0	0	1	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	c0030	1335	1	0	1	0	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	c0031	1330	1	1	0	0	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	c0032	1335	1	1	0	0	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	c0033	1335	1	1	0	0	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	c0034	1335	1	0	0	1	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	c0035	1335	1	0	0	1	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	c0036	1335	1	1	0	0	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	c0037	1334	1	0	0	1	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	c0038	1334	1	0	0	1	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL2_chr19_54845443_54872207	0/0	c0001	1368	116	5	17	82	0	12	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0002	1368	62	3	16	28	5	10	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0003	1368	40	28	8	0	1	3	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0004	1368	36	11	5	5	5	10	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0005	1368	34	5	3	22	3	1	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0006	1368	31	5	1	23	1	1	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0007	1368	14	3	2	9	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0008	1368	13	11	2	0	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0009	1368	8	1	6	0	1	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0010	1368	7	0	0	7	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0011	1368	7	0	1	0	0	6	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0012	1368	7	2	4	0	0	1	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0013	1368	5	5	0	0	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0014	1368	5	3	1	1	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0015	1368	4	0	4	0	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0016	1368	3	0	1	0	0	2	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0017	1368	3	1	0	0	2	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0018	1368	3	0	0	3	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0019	1368	3	0	0	3	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0020	1368	3	0	0	3	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0021	1368	3	0	0	3	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0022	1368	3	0	1	2	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0023	1368	3	3	0	0	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0024	1368	3	3	0	0	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0025	1368	2	1	1	0	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0026	1368	2	2	0	0	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0027	1368	1	0	0	0	0	1	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0028	1368	1	0	0	1	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0029	1368	1	0	0	1	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0030	1368	1	0	0	0	0	1	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0031	1368	1	0	1	0	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0032	355	1	0	1	0	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0033	1368	1	0	0	1	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0034	1368	1	0	0	1	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0035	1368	1	0	0	1	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0036	1368	1	1	0	0	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207