JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KIR3DL2_chr19_54845443_54872207	0/0	c0037	1368	1	0	0	1	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0038	1368	1	0	0	1	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/1	c0039	1368	1	0	0	0	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0040	1368	1	0	0	0	0	1	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0041	1368	1	0	0	1	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0042	1368	1	0	1	0	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0043	1368	1	1	0	0	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0044	1368	1	0	0	1	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0045	1368	1	1	0	0	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0046	1368	1	1	0	0	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	c0047	1368	1	0	0	0	0	1	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL3_chr19_54719442_54741632	0/0	c0001	1233	53	11	11	29	1	1	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0002	1233	51	2	2	46	0	1	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0003	1233	44	0	2	42	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0004	1233	27	0	6	21	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0005	1233	22	0	9	11	0	2	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/1	c0006	1233	22	4	6	1	3	7	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0007	1233	19	0	0	16	1	2	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0008	1233	18	4	5	8	0	1	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0009	1233	17	17	0	0	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0010	1233	15	3	3	3	0	6	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0011	1233	14	0	1	11	0	2	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0012	1233	11	0	2	9	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0013	1233	11	4	4	0	3	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0014	1233	7	1	4	0	1	1	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0015	1233	7	1	2	1	0	3	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0016	1233	6	0	4	0	0	2	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0017	1233	5	0	1	3	0	1	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0018	1233	5	4	0	1	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0019	1233	5	0	1	4	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0020	1233	5	5	0	0	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0021	1233	5	5	0	0	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0022	1233	5	0	2	0	0	3	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0023	1233	5	4	1	0	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0024	1233	5	0	4	0	1	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0025	1233	5	0	0	5	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0026	1233	4	2	1	0	0	1	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0027	1233	4	4	0	0	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0028	1233	4	0	2	0	0	2	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0029	1233	4	4	0	0	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0030	1233	3	3	0	0	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0031	1233	3	0	0	3	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0032	1233	3	0	0	0	1	2	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0033	1233	2	0	2	0	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0034	1233	2	2	0	0	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0035	1233	2	2	0	0	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0036	1233	2	1	1	0	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0037	1233	2	0	1	0	0	1	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0038	1233	2	2	0	0	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0039	1233	2	0	1	1	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632