JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AMFR_chr16_56356452_56430545	1/1	c0001	1932	340	76	60	149	12	41	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	c0002	1932	8	8	0	0	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	c0003	1932	2	2	0	0	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	c0004	1932	1	0	0	1	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	c0005	1932	1	1	0	0	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	c0006	1932	1	0	0	0	0	1	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	c0007	1932	1	0	0	1	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	c0008	1932	1	0	0	1	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	c0009	1932	1	1	0	0	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMHR2_chr12_53418855_53436672	1/1	c0001	1722	302	40	50	160	10	40	copy fasta	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	c0002	1722	49	47	2	0	0	0	copy fasta	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	c0003	1722	1	0	0	1	0	0	copy fasta	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	c0004	1722	1	0	0	1	0	0	copy fasta	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	c0005	1722	1	0	1	0	0	0	copy fasta	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	c0006	1722	1	1	0	0	0	0	copy fasta	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	c0007	1722	1	0	1	0	0	0	copy fasta	AMHR2	chr12	53418855	53436672
AMH_chr19_2244323_2257073	0/0	c0001	1683	237	47	48	101	11	30	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	c0002	1683	51	0	1	47	2	1	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	c0003	1683	47	30	13	4	0	0	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	c0004	1683	25	0	6	13	3	3	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	c0005	1683	25	6	4	10	1	4	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	c0006	1683	9	0	2	5	0	2	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	c0007	1683	7	6	1	0	0	0	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	1/0	c0008	1683	4	0	1	0	0	2	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	c0009	1683	3	0	1	1	0	1	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	c0010	1683	3	2	0	1	0	0	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	c0011	1683	2	2	0	0	0	0	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/1	c0012	1683	2	0	1	0	0	0	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	c0013	1683	2	0	0	2	0	0	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	c0014	1683	1	1	0	0	0	0	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	c0015	1683	1	0	1	0	0	0	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	c0016	1683	1	0	0	1	0	0	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	c0017	1683	1	1	0	0	0	0	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	c0018	1694	1	0	0	1	0	0	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	c0019	1683	1	0	0	1	0	0	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	c0020	1683	1	1	0	0	0	0	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	c0021	1683	1	0	0	1	0	0	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	c0022	1683	1	0	1	0	0	0	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	c0023	1683	1	0	0	1	0	0	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	c0024	1683	1	0	0	0	0	1	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	c0025	1683	1	0	0	0	0	1	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	c0026	1683	1	0	0	0	1	0	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	c0027	1683	1	0	0	0	0	1	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	c0028	1683	1	0	0	1	0	0	copy fasta	AMH	chr19	2244323	2257073
AMIGO1_chr1_109499178_109514727	1/1	c0001	1482	395	98	59	179	14	43	copy fasta	AMIGO1	chr1	109499178	109514727
AMIGO1_chr1_109499178_109514727	0/0	c0002	1482	3	2	0	0	0	1	copy fasta	AMIGO1	chr1	109499178	109514727
AMIGO1_chr1_109499178_109514727	0/0	c0003	1482	1	0	0	1	0	0	copy fasta	AMIGO1	chr1	109499178	109514727
AMIGO1_chr1_109499178_109514727	0/0	c0004	1503	1	0	1	0	0	0	copy fasta	AMIGO1	chr1	109499178	109514727
AMIGO2_chr12_47071447_47084959	1/0	c0001	1569	353	69	48	188	10	37	copy fasta	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/1	c0002	1569	102	20	25	40	8	8	copy fasta	AMIGO2	chr12	47071447	47084959