JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KIR3DL3_chr19_54719442_54741632	0/0	c0040	1233	1	0	0	0	1	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0041	1233	1	0	0	0	0	1	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0042	1233	1	0	0	0	1	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0043	1233	1	0	0	0	0	1	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0044	1233	1	0	0	1	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0045	1233	1	0	0	1	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0046	1233	1	1	0	0	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0047	1233	1	0	0	1	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0048	1233	1	0	0	1	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0049	1233	1	0	0	1	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0050	1233	1	1	0	0	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0051	1233	1	0	0	1	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0052	1233	1	1	0	0	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0053	1233	1	0	0	0	0	1	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0054	1233	1	0	0	0	0	1	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0055	1233	1	0	0	1	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0056	1233	1	1	0	0	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0057	1233	1	0	0	0	0	1	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0058	1233	1	0	0	0	0	1	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0059	1233	1	1	0	0	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0060	1233	1	0	0	0	0	1	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0061	1233	1	1	0	0	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0062	1233	1	1	0	0	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0063	1233	1	1	0	0	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0064	1233	1	0	0	0	1	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0065	1233	1	1	0	0	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0066	1233	1	0	0	0	1	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0067	1233	1	0	0	0	1	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0068	1233	1	1	0	0	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0069	1233	1	0	0	0	1	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0070	1233	1	0	0	0	0	1	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0071	1233	1	1	0	0	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0072	1233	1	0	0	0	1	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0073	1233	1	0	0	1	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0074	1233	1	0	0	1	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0075	1233	1	0	0	1	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0076	1233	1	0	0	1	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0077	1233	1	1	0	0	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	c0078	1233	1	1	0	0	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIRREL1_chr1_157988645_158105262	1/1	c0001	2274	176	40	29	73	7	25	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	c0002	2274	70	19	16	28	4	3	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	c0003	2274	22	11	1	6	1	3	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	c0004	2274	4	3	1	0	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	c0005	2274	3	3	0	0	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	c0006	2274	2	1	1	0	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	c0007	2274	2	2	0	0	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	c0008	2274	1	0	0	1	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	c0009	2274	1	0	0	0	0	1	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	c0010	2274	1	1	0	0	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	c0011	2274	1	0	0	1	0	0	copy fasta	KIRREL1	chr1	157988645	158105262