JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KIRREL1_chr1_157988645_158105262	0/0	c0012	2274	1	1	0	0	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	c0013	2274	1	1	0	0	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	c0014	2274	1	0	0	1	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	c0015	2274	1	0	0	1	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	c0016	2274	1	0	0	1	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL2_chr19_35851911_35872136	1/1	c0001	2127	221	40	53	87	12	27	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	c0002	2127	35	17	0	17	0	1	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	c0003	2127	32	6	11	0	0	15	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	c0004	2127	10	4	3	0	2	1	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	c0005	2127	8	8	0	0	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	c0006	2127	4	0	0	4	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	c0007	2127	4	4	0	0	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	c0008	2127	3	3	0	0	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	c0009	2127	2	2	0	0	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	c0010	2127	2	0	0	2	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	c0011	2127	2	2	0	0	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	c0012	2127	2	0	2	0	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	c0013	2127	2	2	0	0	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	c0014	2127	1	1	0	0	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	c0015	2127	1	0	0	1	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	c0016	2127	1	1	0	0	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	c0017	2127	1	1	0	0	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	c0018	2127	1	0	0	1	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	c0019	2127	1	0	1	0	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	c0020	2127	1	0	0	1	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	c0021	2127	1	0	0	1	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	c0022	2148	1	0	1	0	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	c0023	2127	1	1	0	0	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	c0024	2127	1	0	0	1	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	c0025	2127	1	0	1	0	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	c0026	2127	1	0	0	1	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL3_chr11_126418358_127005770	0/0	c0001	2337	45	16	10	12	5	2	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	c0002	2337	26	16	5	0	4	1	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	c0003	2337	17	5	6	1	2	3	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	c0004	2337	14	9	3	1	1	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	c0005	2337	2	2	0	0	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	c0006	2337	1	0	0	1	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	c0007	2337	1	0	1	0	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	c0008	2337	1	0	1	0	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	c0009	2337	1	1	0	0	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	c0010	2337	1	0	0	1	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	c0011	2337	1	0	1	0	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	c0012	2337	1	0	1	0	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	c0013	2337	1	0	1	0	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	c0014	2337	1	0	1	0	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	c0015	2337	1	1	0	0	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KISS1R_chr19_912333_926005	0/0	c0001	1197	241	56	45	99	12	29	copy fasta	KISS1R	chr19	912333	926005
KISS1R_chr19_912333_926005	1/0	c0002	1197	92	8	19	50	4	10	copy fasta	KISS1R	chr19	912333	926005
KISS1R_chr19_912333_926005	0/1	c0003	1197	50	6	10	22	2	9	copy fasta	KISS1R	chr19	912333	926005
KISS1R_chr19_912333_926005	0/0	c0004	1197	9	9	0	0	0	0	copy fasta	KISS1R	chr19	912333	926005