JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KISS1R_chr19_912333_926005	0/0	c0005	1197	7	7	0	0	0	0	copy fasta	KISS1R	chr19	912333	926005
KISS1R_chr19_912333_926005	0/0	c0006	1197	4	4	0	0	0	0	copy fasta	KISS1R	chr19	912333	926005
KISS1R_chr19_912333_926005	0/0	c0007	1197	3	3	0	0	0	0	copy fasta	KISS1R	chr19	912333	926005
KISS1R_chr19_912333_926005	0/0	c0008	1197	3	3	0	0	0	0	copy fasta	KISS1R	chr19	912333	926005
KISS1R_chr19_912333_926005	0/0	c0009	1197	1	0	0	1	0	0	copy fasta	KISS1R	chr19	912333	926005
KISS1R_chr19_912333_926005	0/0	c0010	1197	1	1	0	0	0	0	copy fasta	KISS1R	chr19	912333	926005
KISS1R_chr19_912333_926005	0/0	c0011	1197	1	0	0	1	0	0	copy fasta	KISS1R	chr19	912333	926005
KISS1R_chr19_912333_926005	0/0	c0012	1197	1	0	0	0	0	1	copy fasta	KISS1R	chr19	912333	926005
KISS1R_chr19_912333_926005	0/0	c0013	1197	1	1	0	0	0	0	copy fasta	KISS1R	chr19	912333	926005
KISS1R_chr19_912333_926005	0/0	c0014	1197	1	0	0	1	0	0	copy fasta	KISS1R	chr19	912333	926005
KISS1R_chr19_912333_926005	0/0	c0015	1197	1	0	0	0	0	1	copy fasta	KISS1R	chr19	912333	926005
KISS1_chr1_204185341_204201491	1/1	c0001	417	211	39	50	77	10	33	copy fasta	KISS1	chr1	204185341	204201491
KISS1_chr1_204185341_204201491	0/0	c0002	416	121	6	23	80	4	8	copy fasta	KISS1	chr1	204185341	204201491
KISS1_chr1_204185341_204201491	0/0	c0003	417	29	25	2	1	0	1	copy fasta	KISS1	chr1	204185341	204201491
KISS1_chr1_204185341_204201491	0/0	c0004	417	17	15	1	0	1	0	copy fasta	KISS1	chr1	204185341	204201491
KISS1_chr1_204185341_204201491	0/0	c0005	417	10	10	0	0	0	0	copy fasta	KISS1	chr1	204185341	204201491
KISS1_chr1_204185341_204201491	0/0	c0006	417	7	0	0	6	1	0	copy fasta	KISS1	chr1	204185341	204201491
KISS1_chr1_204185341_204201491	0/0	c0007	417	4	0	0	4	0	0	copy fasta	KISS1	chr1	204185341	204201491
KISS1_chr1_204185341_204201491	0/0	c0008	417	1	1	0	0	0	0	copy fasta	KISS1	chr1	204185341	204201491
KITLG_chr12_88487793_88585471	1/1	c0001	822	235	80	24	107	6	16	copy fasta	KITLG	chr12	88487793	88585471
KITLG_chr12_88487793_88585471	0/0	c0002	822	4	4	0	0	0	0	copy fasta	KITLG	chr12	88487793	88585471
KITLG_chr12_88487793_88585471	0/0	c0003	822	1	0	0	1	0	0	copy fasta	KITLG	chr12	88487793	88585471
KIT_chr4_54652957_54745715	1/1	c0001	2931	199	40	47	79	5	26	copy fasta	KIT	chr4	54652957	54745715
KIT_chr4_54652957_54745715	0/0	c0002	2931	20	3	5	8	1	3	copy fasta	KIT	chr4	54652957	54745715
KIT_chr4_54652957_54745715	0/0	c0003	2931	18	16	0	0	0	2	copy fasta	KIT	chr4	54652957	54745715
KIT_chr4_54652957_54745715	0/0	c0004	2931	9	0	4	5	0	0	copy fasta	KIT	chr4	54652957	54745715
KIT_chr4_54652957_54745715	0/0	c0005	2931	4	3	1	0	0	0	copy fasta	KIT	chr4	54652957	54745715
KIT_chr4_54652957_54745715	0/0	c0006	2931	3	3	0	0	0	0	copy fasta	KIT	chr4	54652957	54745715
KIT_chr4_54652957_54745715	0/0	c0007	2931	3	0	2	0	0	1	copy fasta	KIT	chr4	54652957	54745715
KIT_chr4_54652957_54745715	0/0	c0008	2931	2	2	0	0	0	0	copy fasta	KIT	chr4	54652957	54745715
KIT_chr4_54652957_54745715	0/0	c0009	2931	2	2	0	0	0	0	copy fasta	KIT	chr4	54652957	54745715
KIT_chr4_54652957_54745715	0/0	c0010	2931	1	1	0	0	0	0	copy fasta	KIT	chr4	54652957	54745715
KIT_chr4_54652957_54745715	0/0	c0011	2931	1	1	0	0	0	0	copy fasta	KIT	chr4	54652957	54745715
KIT_chr4_54652957_54745715	0/0	c0012	2931	1	1	0	0	0	0	copy fasta	KIT	chr4	54652957	54745715
KIT_chr4_54652957_54745715	0/0	c0013	2931	1	1	0	0	0	0	copy fasta	KIT	chr4	54652957	54745715
KIT_chr4_54652957_54745715	0/0	c0014	2931	1	0	1	0	0	0	copy fasta	KIT	chr4	54652957	54745715
KIT_chr4_54652957_54745715	0/0	c0015	2931	1	1	0	0	0	0	copy fasta	KIT	chr4	54652957	54745715
KIT_chr4_54652957_54745715	0/0	c0016	2931	1	1	0	0	0	0	copy fasta	KIT	chr4	54652957	54745715
KIT_chr4_54652957_54745715	0/0	c0017	2931	1	1	0	0	0	0	copy fasta	KIT	chr4	54652957	54745715
KIZ_chr20_21121082_21251622	1/0	c0001	2022	155	35	24	73	7	15	copy fasta	KIZ	chr20	21121082	21251622
KIZ_chr20_21121082_21251622	0/1	c0002	2022	116	19	16	59	6	15	copy fasta	KIZ	chr20	21121082	21251622
KIZ_chr20_21121082_21251622	0/0	c0003	2022	19	14	5	0	0	0	copy fasta	KIZ	chr20	21121082	21251622
KIZ_chr20_21121082_21251622	0/0	c0004	2022	12	11	1	0	0	0	copy fasta	KIZ	chr20	21121082	21251622
KIZ_chr20_21121082_21251622	0/0	c0005	2022	2	2	0	0	0	0	copy fasta	KIZ	chr20	21121082	21251622
KIZ_chr20_21121082_21251622	0/0	c0006	2022	2	2	0	0	0	0	copy fasta	KIZ	chr20	21121082	21251622
KIZ_chr20_21121082_21251622	0/0	c0007	2022	1	1	0	0	0	0	copy fasta	KIZ	chr20	21121082	21251622
KIZ_chr20_21121082_21251622	0/0	c0008	2022	1	1	0	0	0	0	copy fasta	KIZ	chr20	21121082	21251622
KIZ_chr20_21121082_21251622	0/0	c0009	2022	1	1	0	0	0	0	copy fasta	KIZ	chr20	21121082	21251622
KIZ_chr20_21121082_21251622	0/0	c0010	2022	1	0	0	1	0	0	copy fasta	KIZ	chr20	21121082	21251622
KIZ_chr20_21121082_21251622	0/0	c0011	2022	1	1	0	0	0	0	copy fasta	KIZ	chr20	21121082	21251622