JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KIZ_chr20_21121082_21251622	0/0	c0012	2022	1	1	0	0	0	0	copy fasta	KIZ	chr20	21121082	21251622
KIZ_chr20_21121082_21251622	0/0	c0013	2022	1	0	0	0	1	0	copy fasta	KIZ	chr20	21121082	21251622
KIZ_chr20_21121082_21251622	0/0	c0014	2022	1	0	0	1	0	0	copy fasta	KIZ	chr20	21121082	21251622
KLB_chr4_39401930_39456533	0/1	c0001	3135	102	9	32	41	4	15	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	c0002	3135	96	44	18	27	4	3	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	1/0	c0003	3135	91	22	10	49	4	5	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	c0004	3135	61	4	14	29	2	12	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	c0005	3135	5	0	0	5	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	c0006	3135	2	0	1	0	0	1	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	c0007	3135	2	0	0	2	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	c0008	3135	2	1	0	1	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	c0009	3135	2	2	0	0	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	c0010	3135	1	1	0	0	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	c0011	3135	1	1	0	0	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	c0012	3135	1	1	0	0	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	c0013	3135	1	1	0	0	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	c0014	3135	1	0	0	1	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	c0015	3135	1	0	1	0	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	c0016	3135	1	0	0	0	0	1	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	c0017	3135	1	1	0	0	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	c0018	3135	1	0	1	0	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	c0019	3135	1	0	0	1	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	c0020	3135	1	0	0	1	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	c0021	3135	1	0	0	1	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	c0022	3135	1	1	0	0	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	c0023	3135	1	0	0	0	0	1	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	c0024	3135	1	0	1	0	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	c0025	3135	1	0	0	1	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	c0026	3135	1	0	0	1	0	0	copy fasta	KLB	chr4	39401930	39456533
KLC1_chr14_103624211_103706544	1/1	c0001	1920	353	83	68	145	12	43	copy fasta	KLC1	chr14	103624211	103706544
KLC1_chr14_103624211_103706544	0/0	c0002	1920	4	1	3	0	0	0	copy fasta	KLC1	chr14	103624211	103706544
KLC1_chr14_103624211_103706544	0/0	c0003	1920	4	4	0	0	0	0	copy fasta	KLC1	chr14	103624211	103706544
KLC1_chr14_103624211_103706544	0/0	c0004	1920	2	0	0	2	0	0	copy fasta	KLC1	chr14	103624211	103706544
KLC1_chr14_103624211_103706544	0/0	c0005	1920	1	0	0	0	0	1	copy fasta	KLC1	chr14	103624211	103706544
KLC1_chr14_103624211_103706544	0/0	c0006	1920	1	0	0	1	0	0	copy fasta	KLC1	chr14	103624211	103706544
KLC1_chr14_103624211_103706544	0/0	c0007	1920	1	1	0	0	0	0	copy fasta	KLC1	chr14	103624211	103706544
KLC1_chr14_103624211_103706544	0/0	c0008	1920	1	0	1	0	0	0	copy fasta	KLC1	chr14	103624211	103706544
KLC1_chr14_103624211_103706544	0/0	c0009	1920	1	1	0	0	0	0	copy fasta	KLC1	chr14	103624211	103706544
KLC2_chr11_66252703_66272860	1/0	c0001	1869	177	46	31	81	2	16	copy fasta	KLC2	chr11	66252703	66272860
KLC2_chr11_66252703_66272860	0/0	c0002	1869	112	15	24	49	7	17	copy fasta	KLC2	chr11	66252703	66272860
KLC2_chr11_66252703_66272860	0/0	c0003	1869	81	11	13	47	3	7	copy fasta	KLC2	chr11	66252703	66272860
KLC2_chr11_66252703_66272860	0/0	c0004	1869	11	11	0	0	0	0	copy fasta	KLC2	chr11	66252703	66272860
KLC2_chr11_66252703_66272860	0/0	c0005	1869	5	5	0	0	0	0	copy fasta	KLC2	chr11	66252703	66272860
KLC2_chr11_66252703_66272860	0/0	c0006	1869	3	2	1	0	0	0	copy fasta	KLC2	chr11	66252703	66272860
KLC2_chr11_66252703_66272860	0/0	c0007	1869	1	0	1	0	0	0	copy fasta	KLC2	chr11	66252703	66272860
KLC2_chr11_66252703_66272860	0/0	c0008	1869	1	0	0	1	0	0	copy fasta	KLC2	chr11	66252703	66272860
KLC2_chr11_66252703_66272860	0/0	c0009	1869	1	0	0	1	0	0	copy fasta	KLC2	chr11	66252703	66272860
KLC2_chr11_66252703_66272860	0/0	c0010	1869	1	0	0	1	0	0	copy fasta	KLC2	chr11	66252703	66272860
KLC2_chr11_66252703_66272860	0/0	c0011	1869	1	0	0	1	0	0	copy fasta	KLC2	chr11	66252703	66272860
KLC2_chr11_66252703_66272860	0/1	c0012	1869	1	0	0	0	0	0	copy fasta	KLC2	chr11	66252703	66272860