JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KLC2_chr11_66252703_66272860	0/0	c0013	1869	1	0	0	1	0	0	copy fasta	KLC2	chr11	66252703	66272860
KLC3_chr19_45335750_45356519	1/1	c0001	1515	339	67	63	167	9	31	copy fasta	KLC3	chr19	45335750	45356519
KLC3_chr19_45335750_45356519	0/0	c0002	1515	61	14	11	17	8	11	copy fasta	KLC3	chr19	45335750	45356519
KLC3_chr19_45335750_45356519	0/0	c0003	1515	10	10	0	0	0	0	copy fasta	KLC3	chr19	45335750	45356519
KLC3_chr19_45335750_45356519	0/0	c0004	1513	5	0	0	5	0	0	copy fasta	KLC3	chr19	45335750	45356519
KLC3_chr19_45335750_45356519	0/0	c0005	1515	2	2	0	0	0	0	copy fasta	KLC3	chr19	45335750	45356519
KLC3_chr19_45335750_45356519	0/0	c0006	1515	2	0	0	0	0	2	copy fasta	KLC3	chr19	45335750	45356519
KLC3_chr19_45335750_45356519	0/0	c0007	1515	2	0	0	2	0	0	copy fasta	KLC3	chr19	45335750	45356519
KLC3_chr19_45335750_45356519	0/0	c0008	1515	2	0	0	0	0	2	copy fasta	KLC3	chr19	45335750	45356519
KLC3_chr19_45335750_45356519	0/0	c0009	1515	1	1	0	0	0	0	copy fasta	KLC3	chr19	45335750	45356519
KLC3_chr19_45335750_45356519	0/0	c0010	1515	1	0	0	1	0	0	copy fasta	KLC3	chr19	45335750	45356519
KLC3_chr19_45335750_45356519	0/0	c0011	1515	1	1	0	0	0	0	copy fasta	KLC3	chr19	45335750	45356519
KLC3_chr19_45335750_45356519	0/0	c0012	1515	1	1	0	0	0	0	copy fasta	KLC3	chr19	45335750	45356519
KLC3_chr19_45335750_45356519	0/0	c0013	1515	1	1	0	0	0	0	copy fasta	KLC3	chr19	45335750	45356519
KLC3_chr19_45335750_45356519	0/0	c0014	1515	1	0	1	0	0	0	copy fasta	KLC3	chr19	45335750	45356519
KLC3_chr19_45335750_45356519	0/0	c0015	1515	1	0	0	1	0	0	copy fasta	KLC3	chr19	45335750	45356519
KLC3_chr19_45335750_45356519	0/0	c0016	1515	1	0	0	0	1	0	copy fasta	KLC3	chr19	45335750	45356519
KLC3_chr19_45335750_45356519	0/0	c0017	1515	1	0	1	0	0	0	copy fasta	KLC3	chr19	45335750	45356519
KLC3_chr19_45335750_45356519	0/0	c0018	1515	1	1	0	0	0	0	copy fasta	KLC3	chr19	45335750	45356519
KLC3_chr19_45335750_45356519	0/0	c0019	1515	1	0	0	1	0	0	copy fasta	KLC3	chr19	45335750	45356519
KLC4_chr6_43054631_43080093	1/0	c0001	1860	299	79	65	114	9	31	copy fasta	KLC4	chr6	43054631	43080093
KLC4_chr6_43054631_43080093	0/0	c0002	1860	28	5	1	18	1	3	copy fasta	KLC4	chr6	43054631	43080093
KLC4_chr6_43054631_43080093	0/0	c0003	1860	5	5	0	0	0	0	copy fasta	KLC4	chr6	43054631	43080093
KLC4_chr6_43054631_43080093	0/1	c0004	1860	4	0	0	3	0	0	copy fasta	KLC4	chr6	43054631	43080093
KLC4_chr6_43054631_43080093	0/0	c0005	1860	2	2	0	0	0	0	copy fasta	KLC4	chr6	43054631	43080093
KLC4_chr6_43054631_43080093	0/0	c0006	1860	1	0	0	1	0	0	copy fasta	KLC4	chr6	43054631	43080093
KLC4_chr6_43054631_43080093	0/0	c0007	1860	1	1	0	0	0	0	copy fasta	KLC4	chr6	43054631	43080093
KLC4_chr6_43054631_43080093	0/0	c0008	1860	1	1	0	0	0	0	copy fasta	KLC4	chr6	43054631	43080093
KLC4_chr6_43054631_43080093	0/0	c0009	1860	1	1	0	0	0	0	copy fasta	KLC4	chr6	43054631	43080093
KLF10_chr8_102643784_102660725	1/0	c0001	1443	339	84	50	156	8	40	copy fasta	KLF10	chr8	102643784	102660725
KLF10_chr8_102643784_102660725	0/1	c0002	1443	79	1	26	39	7	5	copy fasta	KLF10	chr8	102643784	102660725
KLF10_chr8_102643784_102660725	0/0	c0003	1443	22	0	2	19	0	1	copy fasta	KLF10	chr8	102643784	102660725
KLF10_chr8_102643784_102660725	0/0	c0004	1443	4	0	2	0	0	2	copy fasta	KLF10	chr8	102643784	102660725
KLF10_chr8_102643784_102660725	0/0	c0005	1443	4	4	0	0	0	0	copy fasta	KLF10	chr8	102643784	102660725
KLF10_chr8_102643784_102660725	0/0	c0006	1443	2	0	0	0	2	0	copy fasta	KLF10	chr8	102643784	102660725
KLF10_chr8_102643784_102660725	0/0	c0007	1443	1	0	0	1	0	0	copy fasta	KLF10	chr8	102643784	102660725
KLF10_chr8_102643784_102660725	0/0	c0008	1443	1	1	0	0	0	0	copy fasta	KLF10	chr8	102643784	102660725
KLF10_chr8_102643784_102660725	0/0	c0009	1443	1	1	0	0	0	0	copy fasta	KLF10	chr8	102643784	102660725
KLF10_chr8_102643784_102660725	0/0	c0010	1443	1	0	0	0	1	0	copy fasta	KLF10	chr8	102643784	102660725
KLF10_chr8_102643784_102660725	0/0	c0011	1443	1	0	0	1	0	0	copy fasta	KLF10	chr8	102643784	102660725
KLF10_chr8_102643784_102660725	0/0	c0012	1443	1	1	0	0	0	0	copy fasta	KLF10	chr8	102643784	102660725
KLF11_chr2_10038550_10059836	0/1	c0001	1539	309	74	59	133	13	29	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	1/0	c0002	1539	76	17	11	36	1	10	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	c0003	1539	14	3	5	1	2	3	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	c0004	1539	4	0	0	3	0	1	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	c0005	1539	4	0	0	4	0	0	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	c0006	1539	1	1	0	0	0	0	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	c0007	1539	1	0	0	1	0	0	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	c0008	1539	1	0	1	0	0	0	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	c0009	1539	1	1	0	0	0	0	copy fasta	KLF11	chr2	10038550	10059836