JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KLF11_chr2_10038550_10059836	0/0	c0010	1539	1	1	0	0	0	0	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	c0011	1539	1	1	0	0	0	0	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	c0012	1539	1	0	0	0	0	1	copy fasta	KLF11	chr2	10038550	10059836
KLF12_chr13_73681089_74139404	1/0	c0001	1209	70	28	21	8	1	11	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/1	c0002	1209	49	22	11	1	1	13	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	c0003	1209	1	0	0	1	0	0	copy fasta	KLF12	chr13	73681089	74139404
KLF13_chr15_31321835_31382899	0/1	c0001	867	340	88	62	153	11	25	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	c0002	867	53	1	18	20	3	11	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	c0003	864	7	0	0	6	0	1	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	c0004	867	2	0	0	2	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	c0005	867	1	0	0	1	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	c0006	867	1	0	0	0	0	1	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	c0007	867	1	1	0	0	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	c0008	867	1	0	0	1	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	c0009	867	1	1	0	0	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	c0010	867	1	1	0	0	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	c0011	867	1	0	0	1	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF14_chr7_130725697_130739207	0/1	c0001	972	168	14	32	100	2	19	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	c0002	972	134	35	20	57	8	14	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	1/0	c0003	972	92	11	17	46	4	13	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	c0004	972	18	16	2	0	0	0	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	c0005	972	14	12	2	0	0	0	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	c0006	972	3	3	0	0	0	0	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	c0007	972	2	0	1	0	0	1	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	c0008	972	2	0	0	2	0	0	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	c0009	972	1	0	0	1	0	0	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	c0010	972	1	0	0	1	0	0	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	c0011	972	1	0	0	1	0	0	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	c0012	972	1	0	1	0	0	0	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	c0013	972	1	1	0	0	0	0	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	c0014	972	1	0	0	0	0	1	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	c0015	972	1	1	0	0	0	0	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	c0016	972	1	1	0	0	0	0	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	c0017	972	1	0	1	0	0	0	copy fasta	KLF14	chr7	130725697	130739207
KLF15_chr3_126337635_126362408	1/1	c0001	1251	377	92	71	157	14	41	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	c0002	1251	1	0	1	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	c0003	1251	1	0	0	0	0	1	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	c0004	1251	1	1	0	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	c0005	1251	1	0	0	1	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	c0006	1251	1	1	0	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF16_chr19_1847399_1868579	1/1	c0001	759	202	31	37	93	11	28	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	c0002	759	136	46	28	50	1	11	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	c0003	759	18	0	1	15	0	2	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	c0004	760	17	6	5	5	0	1	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	c0005	760	8	1	2	5	0	0	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	c0006	759	6	0	0	6	0	0	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	c0007	759	3	2	1	0	0	0	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	c0008	759	2	2	0	0	0	0	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	c0009	760	1	0	0	1	0	0	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	c0010	759	1	0	0	1	0	0	copy fasta	KLF16	chr19	1847399	1868579