JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KLF16_chr19_1847399_1868579	0/0	c0011	744	1	1	0	0	0	0	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	c0012	759	1	0	0	1	0	0	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	c0013	759	1	1	0	0	0	0	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	c0014	759	1	0	0	1	0	0	copy fasta	KLF16	chr19	1847399	1868579
KLF17_chr1_44113821_44140140	0/0	c0001	1170	120	5	18	79	9	9	copy fasta	KLF17	chr1	44113821	44140140
KLF17_chr1_44113821_44140140	0/0	c0002	1167	110	10	31	53	1	15	copy fasta	KLF17	chr1	44113821	44140140
KLF17_chr1_44113821_44140140	0/1	c0003	1170	95	10	19	48	3	14	copy fasta	KLF17	chr1	44113821	44140140
KLF17_chr1_44113821_44140140	1/0	c0004	1170	72	42	10	13	2	4	copy fasta	KLF17	chr1	44113821	44140140
KLF17_chr1_44113821_44140140	0/0	c0005	1170	23	19	4	0	0	0	copy fasta	KLF17	chr1	44113821	44140140
KLF17_chr1_44113821_44140140	0/0	c0006	1170	6	0	0	5	1	0	copy fasta	KLF17	chr1	44113821	44140140
KLF17_chr1_44113821_44140140	0/0	c0007	1170	6	0	0	6	0	0	copy fasta	KLF17	chr1	44113821	44140140
KLF17_chr1_44113821_44140140	0/0	c0008	1170	3	3	0	0	0	0	copy fasta	KLF17	chr1	44113821	44140140
KLF17_chr1_44113821_44140140	0/0	c0009	1167	2	0	0	2	0	0	copy fasta	KLF17	chr1	44113821	44140140
KLF17_chr1_44113821_44140140	0/0	c0010	1170	1	0	1	0	0	0	copy fasta	KLF17	chr1	44113821	44140140
KLF17_chr1_44113821_44140140	0/0	c0011	1167	1	0	0	1	0	0	copy fasta	KLF17	chr1	44113821	44140140
KLF17_chr1_44113821_44140140	0/0	c0012	1170	1	1	0	0	0	0	copy fasta	KLF17	chr1	44113821	44140140
KLF17_chr1_44113821_44140140	0/0	c0013	1170	1	1	0	0	0	0	copy fasta	KLF17	chr1	44113821	44140140
KLF17_chr1_44113821_44140140	0/0	c0014	1170	1	0	1	0	0	0	copy fasta	KLF17	chr1	44113821	44140140
KLF17_chr1_44113821_44140140	0/0	c0015	1170	1	1	0	0	0	0	copy fasta	KLF17	chr1	44113821	44140140
KLF17_chr1_44113821_44140140	0/0	c0016	1170	1	0	0	1	0	0	copy fasta	KLF17	chr1	44113821	44140140
KLF18_chr1_44132821_44146631	0/0	c0001	3120	137	35	29	50	2	21	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	c0002	3204	71	1	2	63	1	4	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	c0003	3120	62	12	10	30	0	10	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	c0004	3078	28	0	8	16	3	1	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	1/0	c0005	3159	24	2	10	2	5	4	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	c0006	2490	15	0	5	9	1	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	c0007	3120	14	12	2	0	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	c0008	3120	11	9	2	0	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	c0009	3120	11	10	1	0	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	c0010	3120	5	0	0	5	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	c0011	3120	5	0	0	4	1	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	c0012	3159	4	0	3	0	0	1	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	c0013	3120	3	3	0	0	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	c0014	3120	3	2	1	0	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	c0015	2700	3	0	0	3	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	c0016	3078	2	0	0	2	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	c0017	3120	2	2	0	0	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	c0018	3120	2	0	0	2	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	c0019	3120	2	0	2	0	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	c0020	3120	2	0	0	2	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	c0021	3159	2	1	1	0	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	c0022	3120	1	1	0	0	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	c0023	2742	1	0	1	0	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	c0024	2742	1	0	1	0	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	c0025	3120	1	1	0	0	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	c0026	3078	1	0	0	1	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	c0027	3120	1	0	0	1	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/1	c0028	3078	1	0	0	0	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	c0029	3120	1	0	1	0	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	c0030	3120	1	1	0	0	0	0	copy fasta	KLF18	chr1	44132821	44146631