JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KLF18_chr1_44132821_44146631	0/0	c0031	3120	1	1	0	0	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	c0032	3120	1	1	0	0	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	c0033	3120	1	0	0	0	0	1	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	c0034	3120	1	1	0	0	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	c0035	2700	1	0	0	1	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	c0036	3204	1	0	0	1	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	c0037	3204	1	1	0	0	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	c0038	3159	1	0	0	0	1	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	c0039	2742	1	0	0	1	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	c0040	3120	1	0	0	1	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	c0041	3159	1	0	1	0	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF1_chr19_12879422_12892201	1/0	c0001	1089	168	52	47	38	10	20	copy fasta	KLF1	chr19	12879422	12892201
KLF1_chr19_12879422_12892201	0/1	c0002	1089	151	24	24	80	5	17	copy fasta	KLF1	chr19	12879422	12892201
KLF1_chr19_12879422_12892201	0/0	c0003	1089	33	15	5	9	3	1	copy fasta	KLF1	chr19	12879422	12892201
KLF1_chr19_12879422_12892201	0/0	c0004	1089	15	0	0	15	0	0	copy fasta	KLF1	chr19	12879422	12892201
KLF1_chr19_12879422_12892201	0/0	c0005	1089	2	2	0	0	0	0	copy fasta	KLF1	chr19	12879422	12892201
KLF1_chr19_12879422_12892201	0/0	c0006	1089	1	1	0	0	0	0	copy fasta	KLF1	chr19	12879422	12892201
KLF1_chr19_12879422_12892201	0/0	c0007	1089	1	0	0	1	0	0	copy fasta	KLF1	chr19	12879422	12892201
KLF1_chr19_12879422_12892201	0/0	c0008	1089	1	0	0	1	0	0	copy fasta	KLF1	chr19	12879422	12892201
KLF2_chr19_16319826_16333685	0/1	c0001	1068	296	89	68	96	8	34	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	1/0	c0002	1068	125	1	10	96	10	7	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	c0003	1068	7	0	0	7	0	0	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	c0004	1068	6	2	0	0	0	4	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	c0005	1068	3	0	2	0	0	1	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	c0006	1068	1	1	0	0	0	0	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	c0007	1068	1	1	0	0	0	0	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	c0008	1068	1	1	0	0	0	0	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	c0009	1068	1	1	0	0	0	0	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	c0010	1068	1	0	0	0	0	1	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	c0011	1068	1	0	0	1	0	0	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	c0012	1068	1	0	0	0	0	1	copy fasta	KLF2	chr19	16319826	16333685
KLF3_chr4_38659199_38706517	1/1	c0001	1038	392	87	70	174	14	45	copy fasta	KLF3	chr4	38659199	38706517
KLF3_chr4_38659199_38706517	0/0	c0002	1038	2	2	0	0	0	0	copy fasta	KLF3	chr4	38659199	38706517
KLF3_chr4_38659199_38706517	0/0	c0003	1038	1	0	0	0	0	1	copy fasta	KLF3	chr4	38659199	38706517
KLF3_chr4_38659199_38706517	0/0	c0004	1038	1	1	0	0	0	0	copy fasta	KLF3	chr4	38659199	38706517
KLF4_chr9_107479852_107494769	1/1	c0001	1440	400	80	70	186	16	46	copy fasta	KLF4	chr9	107479852	107494769
KLF4_chr9_107479852_107494769	0/0	c0002	1440	11	11	0	0	0	0	copy fasta	KLF4	chr9	107479852	107494769
KLF4_chr9_107479852_107494769	0/0	c0003	1440	3	0	0	3	0	0	copy fasta	KLF4	chr9	107479852	107494769
KLF4_chr9_107479852_107494769	0/0	c0004	1440	2	0	0	2	0	0	copy fasta	KLF4	chr9	107479852	107494769
KLF4_chr9_107479852_107494769	0/0	c0005	1440	2	2	0	0	0	0	copy fasta	KLF4	chr9	107479852	107494769
KLF4_chr9_107479852_107494769	0/0	c0006	1440	2	0	1	0	1	0	copy fasta	KLF4	chr9	107479852	107494769
KLF4_chr9_107479852_107494769	0/0	c0007	1389	1	0	1	0	0	0	copy fasta	KLF4	chr9	107479852	107494769
KLF4_chr9_107479852_107494769	0/0	c0008	1440	1	0	0	1	0	0	copy fasta	KLF4	chr9	107479852	107494769
KLF4_chr9_107479852_107494769	0/0	c0009	1440	1	1	0	0	0	0	copy fasta	KLF4	chr9	107479852	107494769
KLF4_chr9_107479852_107494769	0/0	c0010	1440	1	1	0	0	0	0	copy fasta	KLF4	chr9	107479852	107494769
KLF4_chr9_107479852_107494769	0/0	c0011	1440	1	0	0	1	0	0	copy fasta	KLF4	chr9	107479852	107494769
KLF4_chr9_107479852_107494769	0/0	c0012	1440	1	1	0	0	0	0	copy fasta	KLF4	chr9	107479852	107494769
KLF4_chr9_107479852_107494769	0/0	c0013	1440	1	0	0	0	1	0	copy fasta	KLF4	chr9	107479852	107494769
KLF4_chr9_107479852_107494769	0/0	c0014	1475	1	0	0	1	0	0	copy fasta	KLF4	chr9	107479852	107494769
KLF5_chr13_73054005_73082538	1/1	c0001	1374	436	90	81	201	16	46	copy fasta	KLF5	chr13	73054005	73082538