JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KLF5_chr13_73054005_73082538	0/0	c0002	1374	1	0	1	0	0	0	copy fasta	KLF5	chr13	73054005	73082538
KLF5_chr13_73054005_73082538	0/0	c0003	1374	1	0	0	1	0	0	copy fasta	KLF5	chr13	73054005	73082538
KLF5_chr13_73054005_73082538	0/0	c0004	1374	1	1	0	0	0	0	copy fasta	KLF5	chr13	73054005	73082538
KLF5_chr13_73054005_73082538	0/0	c0005	1374	1	1	0	0	0	0	copy fasta	KLF5	chr13	73054005	73082538
KLF6_chr10_3770996_3790209	1/1	c0001	852	446	88	75	220	16	45	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	c0002	852	7	6	1	0	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	c0003	852	4	0	0	4	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	c0004	852	1	0	0	0	0	1	copy fasta	KLF6	chr10	3770996	3790209
KLF7_chr2_207069137_207170948	0/1	c0001	909	296	69	64	117	14	31	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	1/0	c0002	909	13	12	0	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	c0003	909	5	5	0	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	c0004	909	1	0	0	0	0	1	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	c0005	909	1	0	0	1	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	c0006	909	1	1	0	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	c0007	909	1	1	0	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF8_chrX_56227356_56296531	1/1	c0001	1080	255	66	46	115	7	19	copy fasta	KLF8	chrX	56227356	56296531
KLF8_chrX_56227356_56296531	0/0	c0002	1080	6	6	0	0	0	0	copy fasta	KLF8	chrX	56227356	56296531
KLF8_chrX_56227356_56296531	0/0	c0003	1080	1	0	0	0	0	1	copy fasta	KLF8	chrX	56227356	56296531
KLF9_chr9_70379604_70419657	1/1	c0001	735	394	84	72	180	14	42	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	0/0	c0002	735	3	0	0	0	0	3	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	0/0	c0003	735	2	0	0	2	0	0	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	0/0	c0004	735	1	0	0	0	0	1	copy fasta	KLF9	chr9	70379604	70419657
KLHDC10_chr7_130065534_130140705	1/1	c0001	1329	375	94	73	153	14	39	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	c0002	1329	7	0	1	5	0	1	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	c0003	1329	4	0	2	0	0	2	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC1_chr14_49688120_49758150	0/1	c0001	1221	166	46	47	46	10	16	copy fasta	KLHDC1	chr14	49688120	49758150
KLHDC1_chr14_49688120_49758150	0/0	c0002	1221	17	17	0	0	0	0	copy fasta	KLHDC1	chr14	49688120	49758150
KLHDC1_chr14_49688120_49758150	1/0	c0003	1221	17	15	1	0	0	0	copy fasta	KLHDC1	chr14	49688120	49758150
KLHDC1_chr14_49688120_49758150	0/0	c0004	1221	3	3	0	0	0	0	copy fasta	KLHDC1	chr14	49688120	49758150
KLHDC1_chr14_49688120_49758150	0/0	c0005	1221	3	0	0	3	0	0	copy fasta	KLHDC1	chr14	49688120	49758150
KLHDC1_chr14_49688120_49758150	0/0	c0006	1221	1	1	0	0	0	0	copy fasta	KLHDC1	chr14	49688120	49758150
KLHDC1_chr14_49688120_49758150	0/0	c0007	1221	1	0	0	1	0	0	copy fasta	KLHDC1	chr14	49688120	49758150
KLHDC2_chr14_49763153_49791385	1/1	c0001	1221	313	79	62	113	14	43	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC2_chr14_49763153_49791385	0/0	c0002	1221	14	14	0	0	0	0	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC2_chr14_49763153_49791385	0/0	c0003	1221	3	0	0	3	0	0	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC2_chr14_49763153_49791385	0/0	c0004	1221	3	0	0	3	0	0	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC2_chr14_49763153_49791385	0/0	c0005	1221	1	0	0	0	0	1	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC2_chr14_49763153_49791385	0/0	c0006	1221	1	0	0	1	0	0	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC2_chr14_49763153_49791385	0/0	c0007	1221	1	1	0	0	0	0	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC3_chr6_43009249_43026294	1/1	c0001	1149	311	85	67	121	8	28	copy fasta	KLHDC3	chr6	43009249	43026294
KLHDC3_chr6_43009249_43026294	0/0	c0002	1149	4	4	0	0	0	0	copy fasta	KLHDC3	chr6	43009249	43026294
KLHDC3_chr6_43009249_43026294	0/0	c0003	1149	1	0	1	0	0	0	copy fasta	KLHDC3	chr6	43009249	43026294
KLHDC3_chr6_43009249_43026294	0/0	c0004	1149	1	0	0	1	0	0	copy fasta	KLHDC3	chr6	43009249	43026294
KLHDC3_chr6_43009249_43026294	0/0	c0005	1149	1	1	0	0	0	0	copy fasta	KLHDC3	chr6	43009249	43026294
KLHDC4_chr16_87702812_87770986	1/1	c0001	1563	192	40	39	83	6	22	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	c0002	1563	115	25	19	54	2	15	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	c0003	1563	16	1	5	2	4	4	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	c0004	1563	11	1	0	10	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	c0005	1563	7	5	2	0	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	c0006	1563	4	1	0	3	0	0	copy fasta	KLHDC4	chr16	87702812	87770986