JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KLHDC4_chr16_87702812_87770986	0/0	c0007	1563	3	0	2	0	0	1	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	c0008	1563	3	2	1	0	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	c0009	1563	2	2	0	0	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	c0010	1563	2	2	0	0	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	c0011	1563	2	0	2	0	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	c0012	1563	2	1	0	0	0	1	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	c0013	1563	1	1	0	0	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	c0014	1563	1	0	1	0	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	c0015	1563	1	0	0	0	0	1	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	c0016	1563	1	1	0	0	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	c0017	1563	1	1	0	0	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	c0018	1563	1	0	0	0	0	1	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	c0019	1563	1	1	0	0	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	c0020	1563	1	1	0	0	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	c0021	1563	1	0	0	1	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	c0022	1563	1	1	0	0	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	c0023	1563	1	1	0	0	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	c0024	1563	1	1	0	0	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	c0025	1563	1	0	0	1	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	c0026	1563	1	1	0	0	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	c0027	1563	1	1	0	0	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	c0028	1563	1	1	0	0	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	c0029	1563	1	0	1	0	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	c0030	1563	1	0	0	0	0	1	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	c0031	1563	1	1	0	0	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	c0032	1563	1	0	0	1	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	c0033	1563	1	0	0	1	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC7A_chr1_18475930_18490974	0/0	c0001	2334	139	10	15	103	3	8	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/1	c0002	2334	116	22	25	49	7	12	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	1/0	c0003	2334	85	25	26	15	4	14	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	c0004	2334	32	8	8	8	4	4	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	c0005	2334	17	0	0	17	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	c0006	2334	8	8	0	0	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	c0007	2334	5	0	0	0	0	5	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	c0008	2334	5	4	1	0	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	c0009	2334	5	5	0	0	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	c0010	2334	4	1	3	0	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	c0011	2334	3	3	0	0	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	c0012	2334	3	0	0	0	0	3	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	c0013	2334	3	2	1	0	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	c0014	2334	2	2	0	0	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	c0015	2334	1	0	0	0	0	1	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	c0016	2334	1	0	0	1	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	c0017	2334	1	1	0	0	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	c0018	2334	1	1	0	0	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	c0019	2334	1	0	1	0	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	c0020	2334	1	1	0	0	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	c0021	2334	1	0	0	1	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	c0022	2334	1	0	0	0	0	1	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	c0023	2334	1	1	0	0	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974