Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ABCB10_chr1_229511582_229563707	0/0	c0011	2217	1	0	0	1	0	0	copy fasta	ABCB10	chr1	229511582	229563707
ABCB10_chr1_229511582_229563707	0/0	c0012	2217	1	1	0	0	0	0	copy fasta	ABCB10	chr1	229511582	229563707
ABCB10_chr1_229511582_229563707	0/0	c0013	2217	1	0	1	0	0	0	copy fasta	ABCB10	chr1	229511582	229563707
ABCB10_chr1_229511582_229563707	0/0	c0014	2217	1	0	1	0	0	0	copy fasta	ABCB10	chr1	229511582	229563707
ABCB10_chr1_229511582_229563707	0/0	c0015	2217	1	0	0	1	0	0	copy fasta	ABCB10	chr1	229511582	229563707
ABCB10_chr1_229511582_229563707	0/0	c0016	2217	1	1	0	0	0	0	copy fasta	ABCB10	chr1	229511582	229563707
ABCB11_chr2_168915781_169036324	0/0	c0001	3966	63	3	11	39	0	10	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/1	c0002	3966	58	15	13	22	2	5	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0003	3966	39	3	15	13	2	6	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	1/0	c0004	3966	31	5	9	11	1	4	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0005	3966	9	0	0	9	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0006	3966	8	0	0	8	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0007	3966	6	2	0	4	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0008	3966	4	1	0	3	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0009	3966	4	2	1	0	1	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0010	3966	3	2	0	1	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0011	3966	3	0	0	1	0	2	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0012	3966	3	3	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0013	3966	3	3	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0014	3966	3	2	1	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0015	3966	2	1	0	1	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0016	3966	2	2	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0017	3966	2	2	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0018	3966	2	2	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0019	3966	2	2	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0020	3966	2	2	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0021	3966	2	0	0	0	0	2	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0022	3966	2	2	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0023	3966	2	1	0	0	0	1	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0024	3966	2	2	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0025	3966	2	2	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0026	3966	2	2	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0027	3966	2	2	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0028	3966	2	2	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0029	3966	1	0	0	1	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0030	3966	1	0	0	1	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0031	3966	1	0	0	1	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0032	3966	1	0	0	1	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0033	3966	1	0	1	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0034	3966	1	0	0	1	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0035	3966	1	0	1	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0036	3966	1	0	0	1	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0037	3966	1	1	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0038	3966	1	0	1	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0039	3966	1	1	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0040	3966	1	0	0	1	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0041	3966	1	0	0	0	0	1	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0042	3966	1	1	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0043	3966	1	1	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	c0044	3966	1	1	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324