JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AMIGO2_chr12_47071447_47084959	0/0	c0003	1569	8	0	0	8	0	0	copy fasta	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	c0004	1569	6	6	0	0	0	0	copy fasta	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	c0005	1569	5	3	2	0	0	0	copy fasta	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	c0006	1569	1	0	0	1	0	0	copy fasta	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	c0007	1569	1	1	0	0	0	0	copy fasta	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	c0008	1569	1	0	0	1	0	0	copy fasta	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	c0009	1569	1	1	0	0	0	0	copy fasta	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	c0010	1569	1	0	1	0	0	0	copy fasta	AMIGO2	chr12	47071447	47084959
AMIGO2_chr12_47071447_47084959	0/0	c0011	1569	1	0	0	0	0	1	copy fasta	AMIGO2	chr12	47071447	47084959
AMIGO3_chr3_49711829_49724684	1/1	c0001	1515	317	82	66	119	18	30	copy fasta	AMIGO3	chr3	49711829	49724684
AMIGO3_chr3_49711829_49724684	0/0	c0002	1515	4	4	0	0	0	0	copy fasta	AMIGO3	chr3	49711829	49724684
AMIGO3_chr3_49711829_49724684	0/0	c0003	1515	2	2	0	0	0	0	copy fasta	AMIGO3	chr3	49711829	49724684
AMIGO3_chr3_49711829_49724684	0/0	c0004	1515	1	0	0	1	0	0	copy fasta	AMIGO3	chr3	49711829	49724684
AMIGO3_chr3_49711829_49724684	0/0	c0005	1515	1	0	0	0	0	1	copy fasta	AMIGO3	chr3	49711829	49724684
AMIGO3_chr3_49711829_49724684	0/0	c0006	1515	1	0	0	1	0	0	copy fasta	AMIGO3	chr3	49711829	49724684
AMIGO3_chr3_49711829_49724684	0/0	c0007	1515	1	0	0	1	0	0	copy fasta	AMIGO3	chr3	49711829	49724684
AMIGO3_chr3_49711829_49724684	0/0	c0008	1515	1	0	0	0	0	1	copy fasta	AMIGO3	chr3	49711829	49724684
AMIGO3_chr3_49711829_49724684	0/0	c0009	1515	1	0	1	0	0	0	copy fasta	AMIGO3	chr3	49711829	49724684
AMIGO3_chr3_49711829_49724684	0/0	c0010	1515	1	1	0	0	0	0	copy fasta	AMIGO3	chr3	49711829	49724684
AMIGO3_chr3_49711829_49724684	0/0	c0011	1515	1	0	1	0	0	0	copy fasta	AMIGO3	chr3	49711829	49724684
AMIGO3_chr3_49711829_49724684	0/0	c0012	1515	1	0	0	1	0	0	copy fasta	AMIGO3	chr3	49711829	49724684
AMIGO3_chr3_49711829_49724684	0/0	c0013	1515	1	1	0	0	0	0	copy fasta	AMIGO3	chr3	49711829	49724684
AMIGO3_chr3_49711829_49724684	0/0	c0014	1515	1	0	0	1	0	0	copy fasta	AMIGO3	chr3	49711829	49724684
AMMECR1L_chr2_127856630_127890956	1/1	c0001	933	332	92	68	121	11	38	copy fasta	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	c0002	933	1	0	0	0	1	0	copy fasta	AMMECR1L	chr2	127856630	127890956
AMMECR1L_chr2_127856630_127890956	0/0	c0003	933	1	0	0	1	0	0	copy fasta	AMMECR1L	chr2	127856630	127890956
AMMECR1_chrX_110189186_110323085	1/1	c0001	1002	155	42	22	68	5	16	copy fasta	AMMECR1	chrX	110189186	110323085
AMN1_chr12_31666142_31734021	1/1	c0001	777	426	93	75	202	16	38	copy fasta	AMN1	chr12	31666142	31734021
AMN1_chr12_31666142_31734021	0/0	c0002	777	4	4	0	0	0	0	copy fasta	AMN1	chr12	31666142	31734021
AMN1_chr12_31666142_31734021	0/0	c0003	777	1	0	1	0	0	0	copy fasta	AMN1	chr12	31666142	31734021
AMN1_chr12_31666142_31734021	0/0	c0004	777	1	1	0	0	0	0	copy fasta	AMN1	chr12	31666142	31734021
AMN_chr14_102917663_102935842	1/1	c0001	1362	437	92	78	200	18	47	copy fasta	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	c0002	1368	4	2	2	0	0	0	copy fasta	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	c0003	1362	2	0	0	2	0	0	copy fasta	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	c0004	1362	1	0	1	0	0	0	copy fasta	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	c0005	1362	1	0	0	1	0	0	copy fasta	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	c0006	1362	1	0	0	1	0	0	copy fasta	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	c0007	1362	1	0	0	0	0	1	copy fasta	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	c0008	1362	1	1	0	0	0	0	copy fasta	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	c0009	1362	1	1	0	0	0	0	copy fasta	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	c0010	1362	1	1	0	0	0	0	copy fasta	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	c0011	1362	1	1	0	0	0	0	copy fasta	AMN	chr14	102917663	102935842
AMN_chr14_102917663_102935842	0/0	c0012	1362	1	0	1	0	0	0	copy fasta	AMN	chr14	102917663	102935842
AMOTL1_chr11_94763356_94881748	1/1	c0001	2871	136	64	19	37	3	11	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	c0002	2871	72	3	16	44	1	8	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	c0003	2871	14	0	3	10	1	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	c0004	2871	4	0	0	0	0	4	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	c0005	2871	3	3	0	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	c0006	2871	2	1	1	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	c0007	2871	1	0	1	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748