JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KLHDC7A_chr1_18475930_18490974	0/0	c0024	2334	1	0	0	1	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	c0025	2334	1	0	0	1	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7B_chr22_50540899_50556023	0/0	c0001	3636	137	14	25	79	5	14	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0002	3660	54	0	1	45	0	8	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	1/0	c0003	3708	39	8	13	8	5	4	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0004	3636	34	0	9	22	0	3	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0005	3636	15	11	3	1	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0006	3636	15	14	1	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0007	3636	13	1	6	6	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0008	3708	7	4	1	0	0	2	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0009	3636	6	0	1	4	0	1	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0010	3636	6	4	1	0	0	1	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0011	3660	6	6	0	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0012	3732	5	0	5	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0013	3660	4	4	0	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0014	3780	4	0	0	3	0	1	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0015	3708	4	4	0	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0016	3636	3	3	0	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0017	3636	3	2	1	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0018	3660	3	3	0	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0019	3588	3	0	1	2	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0020	3708	3	3	0	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0021	3636	3	3	0	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/1	c0022	3648	3	1	1	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0023	3780	2	2	0	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0024	3708	2	1	1	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0025	3636	2	0	0	0	0	2	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0026	3708	2	0	0	0	0	2	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0027	3636	2	0	0	0	2	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0028	3636	2	0	0	1	0	1	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0029	3636	2	0	1	1	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0030	3708	1	0	0	0	0	1	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0031	3636	1	0	0	1	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0032	3708	1	0	1	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0033	3708	1	1	0	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0034	3708	1	1	0	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0035	3636	1	0	0	1	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0036	3636	1	1	0	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0037	3636	1	1	0	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0038	3636	1	1	0	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0039	3636	1	1	0	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0040	3660	1	0	0	1	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0041	3636	1	0	0	1	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0042	3660	1	0	0	1	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0043	3660	1	0	0	0	0	1	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0044	3660	1	0	1	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0045	3660	1	0	0	1	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0046	3660	1	0	0	1	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0047	3660	1	0	0	0	0	1	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0048	3660	1	0	0	1	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023