JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KLHDC7B_chr22_50540899_50556023	0/0	c0049	3732	1	0	1	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0050	3636	1	0	1	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0051	3708	1	0	0	1	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0052	3660	1	1	0	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0053	3660	1	1	0	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0054	3636	1	0	1	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0055	3708	1	0	0	0	0	1	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0056	3708	1	0	0	0	0	1	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0057	3660	1	1	0	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0058	3648	1	0	1	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0059	3780	1	0	0	0	0	1	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0060	3636	1	0	0	0	0	1	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0061	3636	1	0	0	1	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0062	3636	1	0	0	1	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0063	3636	1	0	0	1	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0064	3636	1	0	0	1	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0065	3636	1	0	0	0	1	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0066	3636	1	0	0	1	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0067	3636	1	0	0	1	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0068	3636	1	0	0	0	1	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0069	3637	1	0	0	1	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0070	3636	1	0	1	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0071	3636	1	0	0	0	1	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0072	3636	1	0	0	0	0	1	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0073	3636	1	0	1	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0074	3636	1	1	0	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0075	3636	1	0	1	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0076	3708	1	0	0	0	1	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	c0077	3648	1	0	0	0	0	1	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC8A_chr1_205331061_205361922	1/0	c0001	1053	248	65	38	102	12	30	copy fasta	KLHDC8A	chr1	205331061	205361922
KLHDC8A_chr1_205331061_205361922	0/1	c0002	1053	100	3	16	68	3	9	copy fasta	KLHDC8A	chr1	205331061	205361922
KLHDC8A_chr1_205331061_205361922	0/0	c0003	1053	36	18	9	0	3	6	copy fasta	KLHDC8A	chr1	205331061	205361922
KLHDC8A_chr1_205331061_205361922	0/0	c0004	1053	8	8	0	0	0	0	copy fasta	KLHDC8A	chr1	205331061	205361922
KLHDC8A_chr1_205331061_205361922	0/0	c0005	1053	5	0	4	0	0	1	copy fasta	KLHDC8A	chr1	205331061	205361922
KLHDC8A_chr1_205331061_205361922	0/0	c0006	1053	3	2	1	0	0	0	copy fasta	KLHDC8A	chr1	205331061	205361922
KLHDC8A_chr1_205331061_205361922	0/0	c0007	1053	2	2	0	0	0	0	copy fasta	KLHDC8A	chr1	205331061	205361922
KLHDC8A_chr1_205331061_205361922	0/0	c0008	1053	2	0	2	0	0	0	copy fasta	KLHDC8A	chr1	205331061	205361922
KLHDC8B_chr3_49166598_49181486	1/1	c0001	1065	246	83	47	67	14	33	copy fasta	KLHDC8B	chr3	49166598	49181486
KLHDC8B_chr3_49166598_49181486	0/0	c0002	1065	1	1	0	0	0	0	copy fasta	KLHDC8B	chr3	49166598	49181486
KLHDC8B_chr3_49166598_49181486	0/0	c0003	1065	1	0	1	0	0	0	copy fasta	KLHDC8B	chr3	49166598	49181486
KLHDC8B_chr3_49166598_49181486	0/0	c0004	1065	1	0	0	0	0	1	copy fasta	KLHDC8B	chr3	49166598	49181486
KLHDC8B_chr3_49166598_49181486	0/0	c0005	1065	1	0	0	1	0	0	copy fasta	KLHDC8B	chr3	49166598	49181486
KLHDC9_chr1_161093361_161105346	1/0	c0001	1050	253	71	46	97	10	28	copy fasta	KLHDC9	chr1	161093361	161105346
KLHDC9_chr1_161093361_161105346	0/1	c0002	1050	125	8	29	75	4	8	copy fasta	KLHDC9	chr1	161093361	161105346
KLHDC9_chr1_161093361_161105346	0/0	c0003	1050	18	0	3	11	0	4	copy fasta	KLHDC9	chr1	161093361	161105346
KLHDC9_chr1_161093361_161105346	0/0	c0004	1050	1	1	0	0	0	0	copy fasta	KLHDC9	chr1	161093361	161105346
KLHDC9_chr1_161093361_161105346	0/0	c0005	1050	1	0	1	0	0	0	copy fasta	KLHDC9	chr1	161093361	161105346
KLHDC9_chr1_161093361_161105346	0/0	c0006	1050	1	0	0	1	0	0	copy fasta	KLHDC9	chr1	161093361	161105346
KLHDC9_chr1_161093361_161105346	0/0	c0007	1050	1	0	0	1	0	0	copy fasta	KLHDC9	chr1	161093361	161105346
KLHDC9_chr1_161093361_161105346	0/0	c0008	1050	1	0	1	0	0	0	copy fasta	KLHDC9	chr1	161093361	161105346