JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KLHL15_chrX_23978720_24032186	0/0	c0004	1819	1	0	0	1	0	0	copy fasta	KLHL15	chrX	23978720	24032186
KLHL15_chrX_23978720_24032186	0/0	c0005	1815	1	1	0	0	0	0	copy fasta	KLHL15	chrX	23978720	24032186
KLHL15_chrX_23978720_24032186	0/0	c0006	1815	1	0	0	0	0	1	copy fasta	KLHL15	chrX	23978720	24032186
KLHL15_chrX_23978720_24032186	0/0	c0007	1815	1	1	0	0	0	0	copy fasta	KLHL15	chrX	23978720	24032186
KLHL17_chr1_955584_970719	0/1	c0001	1929	280	53	50	136	10	30	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	0/0	c0002	1929	64	2	23	17	8	14	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	0/0	c0003	1929	23	6	6	8	0	3	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	0/0	c0004	1929	15	0	0	15	0	0	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	0/0	c0005	1929	13	12	1	0	0	0	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	0/0	c0006	1928	10	7	3	0	0	0	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	0/0	c0007	1929	7	7	0	0	0	0	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	1/0	c0008	1929	4	3	0	0	0	0	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	0/0	c0009	1929	3	3	0	0	0	0	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	0/0	c0010	1929	1	0	0	1	0	0	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	0/0	c0011	1929	1	0	0	1	0	0	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	0/0	c0012	1929	1	0	0	0	0	1	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	0/0	c0013	1929	1	1	0	0	0	0	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	0/0	c0014	1929	1	0	0	1	0	0	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	0/0	c0015	1929	1	0	0	1	0	0	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	0/0	c0016	1929	1	1	0	0	0	0	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	0/0	c0017	1929	1	1	0	0	0	0	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	0/0	c0018	1929	1	0	0	1	0	0	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	0/0	c0019	1929	1	0	1	0	0	0	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	0/0	c0020	1928	1	1	0	0	0	0	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	0/0	c0021	1929	1	0	0	1	0	0	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	0/0	c0022	1929	1	1	0	0	0	0	copy fasta	KLHL17	chr1	955584	970719
KLHL18_chr3_47277944_47351816	1/1	c0001	1725	329	79	58	147	9	34	copy fasta	KLHL18	chr3	47277944	47351816
KLHL18_chr3_47277944_47351816	0/0	c0002	1725	2	0	0	2	0	0	copy fasta	KLHL18	chr3	47277944	47351816
KLHL18_chr3_47277944_47351816	0/0	c0003	1725	1	0	0	1	0	0	copy fasta	KLHL18	chr3	47277944	47351816
KLHL18_chr3_47277944_47351816	0/0	c0004	1725	1	1	0	0	0	0	copy fasta	KLHL18	chr3	47277944	47351816
KLHL18_chr3_47277944_47351816	0/0	c0005	1725	1	0	0	1	0	0	copy fasta	KLHL18	chr3	47277944	47351816
KLHL18_chr3_47277944_47351816	0/0	c0006	1725	1	1	0	0	0	0	copy fasta	KLHL18	chr3	47277944	47351816
KLHL18_chr3_47277944_47351816	0/0	c0007	1725	1	0	0	0	1	0	copy fasta	KLHL18	chr3	47277944	47351816
KLHL18_chr3_47277944_47351816	0/0	c0008	1725	1	1	0	0	0	0	copy fasta	KLHL18	chr3	47277944	47351816
KLHL18_chr3_47277944_47351816	0/0	c0009	1725	1	0	0	1	0	0	copy fasta	KLHL18	chr3	47277944	47351816
KLHL1_chr13_69695597_70113452	1/1	c0001	2247	126	41	32	31	6	14	copy fasta	KLHL1	chr13	69695597	70113452
KLHL1_chr13_69695597_70113452	0/0	c0002	2247	28	10	2	13	0	3	copy fasta	KLHL1	chr13	69695597	70113452
KLHL1_chr13_69695597_70113452	0/0	c0003	2247	19	14	1	1	0	3	copy fasta	KLHL1	chr13	69695597	70113452
KLHL1_chr13_69695597_70113452	0/0	c0004	2247	4	1	2	1	0	0	copy fasta	KLHL1	chr13	69695597	70113452
KLHL1_chr13_69695597_70113452	0/0	c0005	2247	1	1	0	0	0	0	copy fasta	KLHL1	chr13	69695597	70113452
KLHL1_chr13_69695597_70113452	0/0	c0006	2247	1	0	0	0	0	1	copy fasta	KLHL1	chr13	69695597	70113452
KLHL1_chr13_69695597_70113452	0/0	c0007	2247	1	0	0	0	0	1	copy fasta	KLHL1	chr13	69695597	70113452
KLHL1_chr13_69695597_70113452	0/0	c0008	2247	1	0	1	0	0	0	copy fasta	KLHL1	chr13	69695597	70113452
KLHL1_chr13_69695597_70113452	0/0	c0009	2274	1	1	0	0	0	0	copy fasta	KLHL1	chr13	69695597	70113452
KLHL20_chr1_173709981_173791692	1/1	c0001	1830	264	37	37	140	12	36	copy fasta	KLHL20	chr1	173709981	173791692
KLHL20_chr1_173709981_173791692	0/0	c0002	1830	33	30	3	0	0	0	copy fasta	KLHL20	chr1	173709981	173791692
KLHL20_chr1_173709981_173791692	0/0	c0003	1830	6	5	1	0	0	0	copy fasta	KLHL20	chr1	173709981	173791692
KLHL20_chr1_173709981_173791692	0/0	c0004	1830	2	2	0	0	0	0	copy fasta	KLHL20	chr1	173709981	173791692
KLHL20_chr1_173709981_173791692	0/0	c0005	1830	2	2	0	0	0	0	copy fasta	KLHL20	chr1	173709981	173791692
KLHL20_chr1_173709981_173791692	0/0	c0006	1830	1	0	0	1	0	0	copy fasta	KLHL20	chr1	173709981	173791692