JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KLHL20_chr1_173709981_173791692	0/0	c0007	1830	1	0	0	1	0	0	copy fasta	KLHL20	chr1	173709981	173791692
KLHL20_chr1_173709981_173791692	0/0	c0008	1830	1	0	1	0	0	0	copy fasta	KLHL20	chr1	173709981	173791692
KLHL21_chr1_6585724_6607869	1/1	c0001	1794	256	61	52	107	5	29	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	c0002	1794	128	20	24	62	7	15	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	c0003	1794	12	3	2	7	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	c0004	1794	6	6	0	0	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	c0005	1794	5	0	0	5	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	c0006	1794	4	0	2	0	2	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	c0007	1794	2	2	0	0	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	c0008	1794	2	1	1	0	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	c0009	1794	1	0	1	0	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	c0010	1794	1	0	0	1	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	c0011	1794	1	1	0	0	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	c0012	1794	1	1	0	0	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	c0013	1794	1	1	0	0	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	c0014	1794	1	0	1	0	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	c0015	1794	1	0	1	0	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL22_chr22_20436519_20500795	1/0	c0001	1905	228	64	49	75	10	29	copy fasta	KLHL22	chr22	20436519	20500795
KLHL22_chr22_20436519_20500795	0/1	c0002	1905	91	17	7	59	2	5	copy fasta	KLHL22	chr22	20436519	20500795
KLHL22_chr22_20436519_20500795	0/0	c0003	1905	12	0	0	11	1	0	copy fasta	KLHL22	chr22	20436519	20500795
KLHL22_chr22_20436519_20500795	0/0	c0004	1905	4	4	0	0	0	0	copy fasta	KLHL22	chr22	20436519	20500795
KLHL22_chr22_20436519_20500795	0/0	c0005	1905	2	0	0	2	0	0	copy fasta	KLHL22	chr22	20436519	20500795
KLHL22_chr22_20436519_20500795	0/0	c0006	1905	1	0	0	1	0	0	copy fasta	KLHL22	chr22	20436519	20500795
KLHL22_chr22_20436519_20500795	0/0	c0007	1905	1	0	0	0	1	0	copy fasta	KLHL22	chr22	20436519	20500795
KLHL22_chr22_20436519_20500795	0/0	c0008	1905	1	1	0	0	0	0	copy fasta	KLHL22	chr22	20436519	20500795
KLHL23_chr2_169728832_169756878	0/0	c0001	1677	320	72	53	142	16	37	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/1	c0002	1677	67	16	13	30	2	5	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	1/0	c0003	1677	6	5	0	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	c0004	1677	4	0	4	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	c0005	1677	3	3	0	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL24_chr3_183630623_183689519	1/1	c0001	1803	145	33	22	56	10	22	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	c0002	1803	140	42	22	63	4	9	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	c0003	1803	18	15	3	0	0	0	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	c0004	1803	3	0	0	3	0	0	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	c0005	1803	2	0	1	0	0	1	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	c0006	1803	1	0	0	1	0	0	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	c0007	1803	1	0	0	1	0	0	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	c0008	1803	1	0	0	1	0	0	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	c0009	1803	1	0	0	1	0	0	copy fasta	KLHL24	chr3	183630623	183689519
KLHL25_chr15_85754326_85799925	1/1	c0001	1770	324	66	53	168	10	25	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	c0002	1770	29	1	17	3	4	4	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	c0003	1770	18	8	5	0	1	4	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	c0004	1770	16	16	0	0	0	0	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	c0005	1770	3	0	0	0	0	3	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	c0006	1770	3	1	0	0	0	2	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	c0007	1770	3	2	1	0	0	0	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	c0008	1770	1	0	0	0	0	1	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	c0009	1770	1	0	1	0	0	0	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	c0010	1770	1	0	0	0	0	1	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	c0011	1770	1	0	0	0	0	1	copy fasta	KLHL25	chr15	85754326	85799925