JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KLHL25_chr15_85754326_85799925	0/0	c0012	1770	1	0	0	1	0	0	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	c0013	1770	1	0	0	1	0	0	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	c0014	1770	1	0	0	0	1	0	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	c0015	1770	1	0	0	1	0	0	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	c0016	1770	1	0	1	0	0	0	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	c0017	1770	1	0	0	0	0	1	copy fasta	KLHL25	chr15	85754326	85799925
KLHL26_chr19_18632028_18676721	1/1	c0001	1848	179	30	42	79	8	18	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	c0002	1848	132	41	28	44	4	15	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	c0003	1848	7	7	0	0	0	0	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	c0004	1848	6	5	1	0	0	0	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	c0005	1848	6	1	3	0	2	0	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	c0006	1848	4	4	0	0	0	0	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	c0007	1848	1	0	0	0	0	1	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	c0008	1848	1	1	0	0	0	0	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	c0009	1848	1	0	0	1	0	0	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	c0010	1848	1	1	0	0	0	0	copy fasta	KLHL26	chr19	18632028	18676721
KLHL28_chr14_44919324_44966947	1/1	c0001	1716	205	76	30	76	10	11	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	c0002	1716	7	0	0	7	0	0	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	c0003	1716	5	4	1	0	0	0	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	c0004	1716	1	0	0	1	0	0	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	c0005	1716	1	0	0	0	0	1	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	c0006	1716	1	1	0	0	0	0	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	c0007	1716	1	0	1	0	0	0	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	c0008	1716	1	0	0	1	0	0	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	c0009	1716	1	0	0	1	0	0	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	c0010	1716	1	1	0	0	0	0	copy fasta	KLHL28	chr14	44919324	44966947
KLHL29_chr2_23380179_23713606	0/0	c0001	2628	63	16	15	23	2	7	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	c0002	2628	45	23	10	8	1	3	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	c0003	2628	10	3	4	0	0	3	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	1/1	c0004	2628	10	4	3	0	1	0	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	c0005	2628	5	0	3	0	1	1	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	c0006	2628	5	0	2	0	1	2	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	c0007	2628	3	2	0	0	0	1	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	c0008	2628	3	2	0	0	0	1	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	c0009	2628	3	0	0	0	0	3	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	c0010	2628	2	0	0	0	0	2	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	c0011	2628	2	2	0	0	0	0	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	c0012	2628	1	0	0	0	0	1	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	c0013	2628	1	1	0	0	0	0	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	c0014	2628	1	0	0	0	0	1	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	c0015	2628	1	0	0	0	0	1	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	c0016	2628	1	1	0	0	0	0	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	c0017	2628	1	0	1	0	0	0	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	c0018	2628	1	1	0	0	0	0	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	c0019	2628	1	1	0	0	0	0	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	c0020	2628	1	0	0	1	0	0	copy fasta	KLHL29	chr2	23380179	23713606
KLHL2_chr4_165202561_165328147	1/1	c0001	1782	136	49	20	51	3	11	copy fasta	KLHL2	chr4	165202561	165328147
KLHL2_chr4_165202561_165328147	0/0	c0002	1782	113	36	22	41	7	7	copy fasta	KLHL2	chr4	165202561	165328147
KLHL2_chr4_165202561_165328147	0/0	c0003	1782	2	2	0	0	0	0	copy fasta	KLHL2	chr4	165202561	165328147
KLHL2_chr4_165202561_165328147	0/0	c0004	1782	2	2	0	0	0	0	copy fasta	KLHL2	chr4	165202561	165328147