JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KLHL2_chr4_165202561_165328147	0/0	c0005	1782	1	1	0	0	0	0	copy fasta	KLHL2	chr4	165202561	165328147
KLHL30_chr2_238133668_238157947	0/0	c0001	1737	160	24	18	101	5	12	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/1	c0002	1737	106	16	15	50	8	16	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	c0003	1737	28	9	6	9	1	3	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	1/0	c0004	1737	25	1	16	3	2	2	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	c0005	1737	17	0	7	1	2	7	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	c0006	1737	16	10	4	2	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	c0007	1737	11	3	3	5	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	c0008	1737	8	6	2	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	c0009	1737	8	4	0	4	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	c0010	1737	7	7	0	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	c0011	1737	7	7	0	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	c0012	1737	6	0	2	4	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	c0013	1737	6	0	0	6	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	c0014	1737	5	0	0	4	0	1	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	c0015	1737	4	0	0	4	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	c0016	1737	4	0	0	3	0	1	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	c0017	1737	3	0	1	1	0	1	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	c0018	1737	2	1	1	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	c0019	1737	2	0	0	2	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	c0020	1737	2	0	1	1	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	c0021	1737	2	2	0	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	c0022	1737	2	0	2	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	c0023	1737	2	2	0	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	c0024	1720	1	0	0	0	0	1	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	c0025	1737	1	0	1	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	c0026	1737	1	0	1	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	c0027	1737	1	0	0	0	0	1	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	c0028	1737	1	0	0	1	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	c0029	1737	1	0	0	1	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	c0030	1737	1	0	1	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	c0031	1737	1	0	0	1	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	c0032	1737	1	0	0	1	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	c0033	1737	1	1	0	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	c0034	1737	1	0	0	0	0	1	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	c0035	1737	1	0	1	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	c0036	1737	1	0	0	1	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	c0037	1737	1	0	0	1	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	c0038	1737	1	0	1	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	c0039	1737	1	1	0	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	c0040	1737	1	0	1	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL31_chr6_53642916_53670756	0/0	c0001	1905	189	17	46	98	5	23	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/1	c0002	1905	78	30	12	19	8	8	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	c0003	1905	74	14	5	44	1	10	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	c0004	1905	48	11	9	21	2	5	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	c0005	1905	13	13	0	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	c0006	1905	4	4	0	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	c0007	1905	3	0	0	3	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	1/0	c0008	1905	3	2	0	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	c0009	1905	2	2	0	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756