JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KLHL31_chr6_53642916_53670756	0/0	c0010	1905	2	0	2	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	c0011	1905	2	0	0	2	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	c0012	1905	1	1	0	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	c0013	1905	1	0	0	1	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL32_chr6_96919728_97145753	1/0	c0001	1863	200	45	34	96	8	16	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	c0002	1863	19	8	1	9	0	1	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	c0003	1863	8	6	0	0	0	2	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	c0004	1863	3	3	0	0	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	c0005	1863	3	0	0	3	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	c0006	1863	2	2	0	0	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	c0007	1863	2	1	1	0	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	c0008	1863	2	2	0	0	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	c0009	1863	1	1	0	0	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	c0010	1863	1	1	0	0	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/1	c0011	1863	1	0	0	0	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	c0012	1863	1	1	0	0	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	c0013	1863	1	0	0	0	0	1	copy fasta	KLHL32	chr6	96919728	97145753
KLHL33_chr14_20420852_20441166	0/0	c0001	2394	171	15	44	89	4	19	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0002	2394	59	2	5	44	5	3	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/1	c0003	2394	52	7	7	34	2	1	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0004	2394	38	6	10	10	3	9	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0005	2394	27	24	2	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0006	2394	18	4	3	10	0	1	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0007	2394	15	4	3	1	2	5	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0008	2394	10	1	5	4	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0009	2394	6	4	0	2	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0010	2394	5	0	0	5	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0011	2394	5	4	1	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0012	2394	5	0	0	5	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	1/0	c0013	2394	5	0	4	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0014	2394	4	1	0	0	1	2	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0015	2394	4	4	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0016	2394	4	4	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0017	2394	3	0	0	0	0	3	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0018	2394	3	2	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0019	2394	3	1	0	1	1	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0020	2394	3	1	0	2	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0021	2394	3	3	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0022	2394	3	0	0	3	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0023	2394	3	0	0	3	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0024	2394	2	0	0	2	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0025	2394	2	0	0	2	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0026	2394	2	0	0	2	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0027	2394	2	2	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0028	2394	2	2	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0029	2394	1	0	0	0	0	1	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0030	2394	1	0	1	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0031	2394	1	1	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0032	2394	1	1	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0033	2394	1	0	0	0	0	1	copy fasta	KLHL33	chr14	20420852	20441166