JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KLHL33_chr14_20420852_20441166	0/0	c0034	2394	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0035	2394	1	0	1	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0036	2394	1	1	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0037	2394	1	0	0	0	0	1	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0038	2394	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0039	2394	1	1	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0040	2394	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0041	2394	1	0	1	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0042	2394	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0043	2382	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0044	2394	1	1	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0045	2394	1	0	0	0	0	1	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0046	2394	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0047	2394	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0048	2394	1	0	1	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	c0049	2394	1	0	0	0	0	1	copy fasta	KLHL33	chr14	20420852	20441166
KLHL34_chrX_21649690_21663330	1/1	c0001	1935	251	69	53	99	9	19	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	c0002	1932	3	0	0	3	0	0	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	c0003	1935	1	0	1	0	0	0	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	c0004	1935	1	0	0	1	0	0	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	c0005	1935	1	0	0	1	0	0	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	c0006	1936	1	0	0	1	0	0	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	c0007	1935	1	0	0	1	0	0	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	c0008	1935	1	0	0	1	0	0	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	c0009	1935	1	0	1	0	0	0	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	c0010	1935	1	0	0	1	0	0	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	c0011	1933	1	0	0	1	0	0	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	c0012	1935	1	1	0	0	0	0	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	c0013	1935	1	0	0	0	0	1	copy fasta	KLHL34	chrX	21649690	21663330
KLHL35_chr11_75417394_75438203	0/0	c0001	1752	213	72	35	79	8	19	copy fasta	KLHL35	chr11	75417394	75438203
KLHL35_chr11_75417394_75438203	1/1	c0002	1752	143	14	30	72	7	18	copy fasta	KLHL35	chr11	75417394	75438203
KLHL35_chr11_75417394_75438203	0/0	c0003	1752	51	8	6	26	0	11	copy fasta	KLHL35	chr11	75417394	75438203
KLHL35_chr11_75417394_75438203	0/0	c0004	1752	3	3	0	0	0	0	copy fasta	KLHL35	chr11	75417394	75438203
KLHL35_chr11_75417394_75438203	0/0	c0005	1752	2	0	0	0	1	1	copy fasta	KLHL35	chr11	75417394	75438203
KLHL35_chr11_75417394_75438203	0/0	c0006	1752	2	0	2	0	0	0	copy fasta	KLHL35	chr11	75417394	75438203
KLHL35_chr11_75417394_75438203	0/0	c0007	1752	1	0	0	0	1	0	copy fasta	KLHL35	chr11	75417394	75438203
KLHL35_chr11_75417394_75438203	0/0	c0008	1752	1	0	1	0	0	0	copy fasta	KLHL35	chr11	75417394	75438203
KLHL35_chr11_75417394_75438203	0/0	c0009	1752	1	0	0	1	0	0	copy fasta	KLHL35	chr11	75417394	75438203
KLHL35_chr11_75417394_75438203	0/0	c0010	1752	1	1	0	0	0	0	copy fasta	KLHL35	chr11	75417394	75438203
KLHL35_chr11_75417394_75438203	0/0	c0011	1752	1	0	0	0	0	1	copy fasta	KLHL35	chr11	75417394	75438203
KLHL35_chr11_75417394_75438203	0/0	c0012	1752	1	0	0	0	1	0	copy fasta	KLHL35	chr11	75417394	75438203
KLHL36_chr16_84643511_84672686	1/0	c0001	1851	274	39	43	150	5	36	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/1	c0002	1851	83	9	9	47	9	8	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	c0003	1851	31	12	8	6	3	2	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	c0004	1851	13	11	2	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	c0005	1851	6	5	1	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	c0006	1851	5	5	0	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	c0007	1851	5	5	0	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	c0008	1851	5	0	0	5	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	c0009	1851	4	3	1	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686