JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KLHL36_chr16_84643511_84672686	0/0	c0010	1851	4	0	2	0	0	2	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	c0011	1851	3	0	2	0	1	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	c0012	1851	2	2	0	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	c0013	1851	2	2	0	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	c0014	1851	2	0	2	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	c0015	1851	2	2	0	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	c0016	1851	1	0	0	1	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	c0017	1851	1	1	0	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	c0018	1851	1	0	0	1	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	c0019	1851	1	1	0	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	c0020	1851	1	0	0	1	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	c0021	1851	1	0	0	1	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL36_chr16_84643511_84672686	0/0	c0022	1851	1	1	0	0	0	0	copy fasta	KLHL36	chr16	84643511	84672686
KLHL38_chr8_123639442_123658801	0/1	c0001	1746	173	27	35	85	8	17	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	c0002	1746	66	18	7	35	1	5	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	c0003	1746	57	4	4	43	0	6	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	1/0	c0004	1746	40	8	13	13	1	4	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	c0005	1746	31	0	4	24	1	2	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	c0006	1746	12	5	3	1	0	3	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	c0007	1746	9	0	5	0	4	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	c0008	1746	9	9	0	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	c0009	1746	6	6	0	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	c0010	1746	5	5	0	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	c0011	1746	3	0	0	0	0	3	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	c0012	1746	3	0	0	3	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	c0013	1746	3	0	0	2	0	1	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	c0014	1746	2	1	1	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	c0015	1746	2	2	0	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	c0016	1746	2	2	0	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	c0017	1746	2	0	2	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	c0018	1746	1	0	0	0	0	1	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	c0019	1746	1	0	1	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	c0020	1746	1	0	0	1	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	c0021	1746	1	1	0	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	c0022	1746	1	0	0	1	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	c0023	1746	1	0	0	1	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	c0024	1746	1	0	0	0	0	1	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	c0025	1746	1	0	1	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	c0026	1746	1	0	0	0	0	1	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	c0027	1746	1	0	0	0	0	1	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	c0028	1746	1	0	0	0	0	1	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	c0029	1746	1	1	0	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	c0030	1746	1	0	0	1	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	c0031	1746	1	0	0	1	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	c0032	1746	1	0	0	1	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	c0033	1746	1	0	0	0	1	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	c0034	1746	1	0	0	1	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	c0035	1746	1	0	0	1	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	c0036	1746	1	1	0	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	c0037	1746	1	1	0	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801