JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AMOTL1_chr11_94763356_94881748	0/0	c0008	2871	1	1	0	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	c0009	2871	1	1	0	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	c0010	2871	1	1	0	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	c0011	2871	1	1	0	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	c0012	2871	1	0	0	0	1	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	c0013	2871	1	0	1	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	c0014	2871	1	1	0	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	c0015	2871	1	0	1	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	c0016	2871	1	1	0	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	c0017	2871	1	1	0	0	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	c0018	2871	1	0	0	1	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	c0019	2871	1	0	0	0	0	1	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	c0020	2871	1	0	0	1	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL1_chr11_94763356_94881748	0/0	c0021	2871	1	0	0	1	0	0	copy fasta	AMOTL1	chr11	94763356	94881748
AMOTL2_chr3_134350347_134379447	0/0	c0001	2343	206	61	54	58	7	26	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	1/1	c0002	2343	40	4	17	2	5	10	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	c0003	2343	17	0	0	17	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	c0004	2343	14	0	1	10	0	3	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	c0005	2343	14	12	2	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	c0006	2343	10	0	0	10	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	c0007	2343	9	0	2	7	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	c0008	2343	5	5	0	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	c0009	2343	2	0	0	2	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	c0010	2343	2	2	0	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	c0011	2343	2	0	0	2	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	c0012	2343	2	2	0	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	c0013	2343	1	0	0	0	0	1	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	c0014	2343	1	0	1	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	c0015	2343	1	0	0	1	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	c0016	2343	1	0	0	1	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	c0017	2343	1	1	0	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	c0018	2343	1	0	0	1	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	c0019	2343	1	1	0	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	c0020	2343	1	0	1	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	c0021	2343	1	1	0	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	c0022	2343	1	1	0	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	c0023	2343	1	1	0	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	c0024	2343	1	1	0	0	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOTL2_chr3_134350347_134379447	0/0	c0025	2343	1	0	0	1	0	0	copy fasta	AMOTL2	chr3	134350347	134379447
AMOT_chrX_112769877_112845831	1/0	c0001	3255	195	58	28	89	5	14	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	c0002	3255	47	4	9	28	0	6	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	c0003	3258	9	5	4	0	0	0	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	c0004	3255	8	8	0	0	0	0	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	c0005	3255	3	3	0	0	0	0	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/1	c0006	3228	3	0	2	0	0	0	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	c0007	3255	2	2	0	0	0	0	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	c0008	3255	1	0	0	1	0	0	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	c0009	3255	1	0	0	1	0	0	copy fasta	AMOT	chrX	112769877	112845831
AMOT_chrX_112769877_112845831	0/0	c0010	3255	1	0	0	1	0	0	copy fasta	AMOT	chrX	112769877	112845831
AMPD1_chr1_114668098_114700546	1/1	c0001	2244	324	81	61	134	14	32	copy fasta	AMPD1	chr1	114668098	114700546