JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KLHL38_chr8_123639442_123658801	0/0	c0038	1746	1	1	0	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL3_chr5_137612500_137741089	0/1	c0001	1764	154	59	34	26	10	24	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	1/0	c0002	1764	47	15	15	6	3	7	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	c0003	1764	41	6	10	18	1	6	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	c0004	1764	4	0	3	0	0	1	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	c0005	1764	2	0	0	2	0	0	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	c0006	1764	1	1	0	0	0	0	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	c0007	1764	1	1	0	0	0	0	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	c0008	1764	1	1	0	0	0	0	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	c0009	1764	1	1	0	0	0	0	copy fasta	KLHL3	chr5	137612500	137741089
KLHL40_chr3_42680537_42697544	0/1	c0001	1866	274	35	50	141	12	35	copy fasta	KLHL40	chr3	42680537	42697544
KLHL40_chr3_42680537_42697544	0/0	c0002	1866	99	37	21	29	3	9	copy fasta	KLHL40	chr3	42680537	42697544
KLHL40_chr3_42680537_42697544	1/0	c0003	1866	21	1	13	0	1	5	copy fasta	KLHL40	chr3	42680537	42697544
KLHL40_chr3_42680537_42697544	0/0	c0004	1866	9	0	2	7	0	0	copy fasta	KLHL40	chr3	42680537	42697544
KLHL40_chr3_42680537_42697544	0/0	c0005	1866	9	9	0	0	0	0	copy fasta	KLHL40	chr3	42680537	42697544
KLHL40_chr3_42680537_42697544	0/0	c0006	1863	7	7	0	0	0	0	copy fasta	KLHL40	chr3	42680537	42697544
KLHL40_chr3_42680537_42697544	0/0	c0007	1866	3	0	0	3	0	0	copy fasta	KLHL40	chr3	42680537	42697544
KLHL40_chr3_42680537_42697544	0/0	c0008	1866	2	0	0	2	0	0	copy fasta	KLHL40	chr3	42680537	42697544
KLHL40_chr3_42680537_42697544	0/0	c0009	1866	2	2	0	0	0	0	copy fasta	KLHL40	chr3	42680537	42697544
KLHL40_chr3_42680537_42697544	0/0	c0010	1866	2	2	0	0	0	0	copy fasta	KLHL40	chr3	42680537	42697544
KLHL40_chr3_42680537_42697544	0/0	c0011	1866	2	0	0	2	0	0	copy fasta	KLHL40	chr3	42680537	42697544
KLHL40_chr3_42680537_42697544	0/0	c0012	1866	2	2	0	0	0	0	copy fasta	KLHL40	chr3	42680537	42697544
KLHL40_chr3_42680537_42697544	0/0	c0013	1866	1	0	1	0	0	0	copy fasta	KLHL40	chr3	42680537	42697544
KLHL40_chr3_42680537_42697544	0/0	c0014	1866	1	0	0	1	0	0	copy fasta	KLHL40	chr3	42680537	42697544
KLHL40_chr3_42680537_42697544	0/0	c0015	1866	1	0	0	0	0	1	copy fasta	KLHL40	chr3	42680537	42697544
KLHL40_chr3_42680537_42697544	0/0	c0016	1866	1	0	1	0	0	0	copy fasta	KLHL40	chr3	42680537	42697544
KLHL40_chr3_42680537_42697544	0/0	c0017	1866	1	0	0	1	0	0	copy fasta	KLHL40	chr3	42680537	42697544
KLHL40_chr3_42680537_42697544	0/0	c0018	1866	1	1	0	0	0	0	copy fasta	KLHL40	chr3	42680537	42697544
KLHL41_chr2_169504702_169531258	1/1	c0001	1821	379	79	53	193	12	40	copy fasta	KLHL41	chr2	169504702	169531258
KLHL41_chr2_169504702_169531258	0/0	c0002	1821	13	2	5	1	1	4	copy fasta	KLHL41	chr2	169504702	169531258
KLHL41_chr2_169504702_169531258	0/0	c0003	1821	8	0	0	8	0	0	copy fasta	KLHL41	chr2	169504702	169531258
KLHL41_chr2_169504702_169531258	0/0	c0004	1821	7	7	0	0	0	0	copy fasta	KLHL41	chr2	169504702	169531258
KLHL41_chr2_169504702_169531258	0/0	c0005	1821	3	3	0	0	0	0	copy fasta	KLHL41	chr2	169504702	169531258
KLHL41_chr2_169504702_169531258	0/0	c0006	1821	2	2	0	0	0	0	copy fasta	KLHL41	chr2	169504702	169531258
KLHL41_chr2_169504702_169531258	0/0	c0007	1821	2	0	2	0	0	0	copy fasta	KLHL41	chr2	169504702	169531258
KLHL41_chr2_169504702_169531258	0/0	c0008	1821	2	0	0	0	1	1	copy fasta	KLHL41	chr2	169504702	169531258
KLHL41_chr2_169504702_169531258	0/0	c0009	1821	1	1	0	0	0	0	copy fasta	KLHL41	chr2	169504702	169531258
KLHL41_chr2_169504702_169531258	0/0	c0010	1821	1	1	0	0	0	0	copy fasta	KLHL41	chr2	169504702	169531258
KLHL41_chr2_169504702_169531258	0/0	c0011	1821	1	0	0	1	0	0	copy fasta	KLHL41	chr2	169504702	169531258
KLHL41_chr2_169504702_169531258	0/0	c0012	1821	1	0	0	0	0	1	copy fasta	KLHL41	chr2	169504702	169531258
KLHL41_chr2_169504702_169531258	0/0	c0013	1821	1	0	0	1	0	0	copy fasta	KLHL41	chr2	169504702	169531258
KLHL41_chr2_169504702_169531258	0/0	c0014	1821	1	1	0	0	0	0	copy fasta	KLHL41	chr2	169504702	169531258
KLHL42_chr12_27775233_27808040	1/1	c0001	1518	416	94	73	188	15	44	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	c0002	1518	1	0	1	0	0	0	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	c0003	1518	1	0	0	0	1	0	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	c0004	1518	1	1	0	0	0	0	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	c0005	1518	1	1	0	0	0	0	copy fasta	KLHL42	chr12	27775233	27808040
KLHL4_chrX_87512802_87675050	0/1	c0001	2157	118	28	17	56	3	13	copy fasta	KLHL4	chrX	87512802	87675050
KLHL4_chrX_87512802_87675050	1/0	c0002	2157	106	24	23	43	2	13	copy fasta	KLHL4	chrX	87512802	87675050
KLHL4_chrX_87512802_87675050	0/0	c0003	2157	25	0	2	13	2	8	copy fasta	KLHL4	chrX	87512802	87675050