JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KLHL9_chr9_21324665_21340404	0/0	c0005	1854	1	0	0	1	0	0	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	c0006	1854	1	0	0	1	0	0	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	c0007	1854	1	1	0	0	0	0	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	c0008	1854	1	0	0	0	0	1	copy fasta	KLHL9	chr9	21324665	21340404
KLHL9_chr9_21324665_21340404	0/0	c0009	1854	1	1	0	0	0	0	copy fasta	KLHL9	chr9	21324665	21340404
KLK10_chr19_51007739_51024709	1/0	c0001	831	139	1	26	80	6	25	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/1	c0002	831	123	40	29	38	5	10	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	c0003	831	107	37	15	46	1	8	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	c0004	831	46	4	2	37	0	3	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	c0005	831	13	8	2	3	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	c0006	831	8	1	4	3	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	c0007	831	3	3	0	0	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	c0008	826	2	0	1	0	1	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	c0009	831	2	0	0	2	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	c0010	831	1	1	0	0	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	c0011	831	1	0	1	0	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	c0012	831	1	0	0	0	1	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	c0013	831	1	0	0	1	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	c0014	831	1	0	0	1	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	c0015	831	1	0	0	1	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK10_chr19_51007739_51024709	0/0	c0016	831	1	1	0	0	0	0	copy fasta	KLK10	chr19	51007739	51024709
KLK11_chr19_51017236_51031616	1/1	c0001	753	395	91	74	169	18	41	copy fasta	KLK11	chr19	51017236	51031616
KLK11_chr19_51017236_51031616	0/0	c0002	753	42	4	4	29	0	5	copy fasta	KLK11	chr19	51017236	51031616
KLK11_chr19_51017236_51031616	0/0	c0003	753	6	0	5	0	0	1	copy fasta	KLK11	chr19	51017236	51031616
KLK11_chr19_51017236_51031616	0/0	c0004	753	5	0	0	5	0	0	copy fasta	KLK11	chr19	51017236	51031616
KLK11_chr19_51017236_51031616	0/0	c0005	753	3	3	0	0	0	0	copy fasta	KLK11	chr19	51017236	51031616
KLK11_chr19_51017236_51031616	0/0	c0006	753	1	0	0	1	0	0	copy fasta	KLK11	chr19	51017236	51031616
KLK11_chr19_51017236_51031616	0/0	c0007	753	1	0	1	0	0	0	copy fasta	KLK11	chr19	51017236	51031616
KLK11_chr19_51017236_51031616	0/0	c0008	753	1	0	0	1	0	0	copy fasta	KLK11	chr19	51017236	51031616
KLK11_chr19_51017236_51031616	0/0	c0009	753	1	0	0	0	0	1	copy fasta	KLK11	chr19	51017236	51031616
KLK11_chr19_51017236_51031616	0/0	c0010	753	1	0	0	1	0	0	copy fasta	KLK11	chr19	51017236	51031616
KLK12_chr19_51024094_51040002	1/1	c0001	747	421	75	75	202	18	49	copy fasta	KLK12	chr19	51024094	51040002
KLK12_chr19_51024094_51040002	0/0	c0002	747	8	8	0	0	0	0	copy fasta	KLK12	chr19	51024094	51040002
KLK12_chr19_51024094_51040002	0/0	c0003	747	6	4	1	0	0	1	copy fasta	KLK12	chr19	51024094	51040002
KLK12_chr19_51024094_51040002	0/0	c0004	747	5	5	0	0	0	0	copy fasta	KLK12	chr19	51024094	51040002
KLK12_chr19_51024094_51040002	0/0	c0005	747	4	3	1	0	0	0	copy fasta	KLK12	chr19	51024094	51040002
KLK12_chr19_51024094_51040002	0/0	c0006	747	1	0	0	1	0	0	copy fasta	KLK12	chr19	51024094	51040002
KLK12_chr19_51024094_51040002	0/0	c0007	747	1	0	0	1	0	0	copy fasta	KLK12	chr19	51024094	51040002
KLK12_chr19_51024094_51040002	0/0	c0008	747	1	0	1	0	0	0	copy fasta	KLK12	chr19	51024094	51040002
KLK12_chr19_51024094_51040002	0/0	c0009	747	1	1	0	0	0	0	copy fasta	KLK12	chr19	51024094	51040002
KLK13_chr19_51050626_51070092	1/1	c0001	834	448	92	81	208	18	47	copy fasta	KLK13	chr19	51050626	51070092
KLK13_chr19_51050626_51070092	0/0	c0002	834	4	4	0	0	0	0	copy fasta	KLK13	chr19	51050626	51070092
KLK13_chr19_51050626_51070092	0/0	c0003	834	2	0	0	0	0	2	copy fasta	KLK13	chr19	51050626	51070092
KLK13_chr19_51050626_51070092	0/0	c0004	834	1	1	0	0	0	0	copy fasta	KLK13	chr19	51050626	51070092
KLK13_chr19_51050626_51070092	0/0	c0005	834	1	0	0	1	0	0	copy fasta	KLK13	chr19	51050626	51070092
KLK13_chr19_51050626_51070092	0/0	c0006	834	1	0	1	0	0	0	copy fasta	KLK13	chr19	51050626	51070092
KLK13_chr19_51050626_51070092	0/0	c0007	834	1	1	0	0	0	0	copy fasta	KLK13	chr19	51050626	51070092
KLK13_chr19_51050626_51070092	0/0	c0008	834	1	0	0	0	0	1	copy fasta	KLK13	chr19	51050626	51070092
KLK13_chr19_51050626_51070092	0/0	c0009	834	1	0	0	1	0	0	copy fasta	KLK13	chr19	51050626	51070092
KLK14_chr19_51072897_51087887	1/1	c0001	756	280	23	48	179	9	19	copy fasta	KLK14	chr19	51072897	51087887