JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KLK14_chr19_51072897_51087887	0/0	c0002	756	99	42	23	13	6	15	copy fasta	KLK14	chr19	51072897	51087887
KLK14_chr19_51072897_51087887	0/0	c0003	756	21	16	1	0	0	4	copy fasta	KLK14	chr19	51072897	51087887
KLK14_chr19_51072897_51087887	0/0	c0004	756	11	0	3	0	3	5	copy fasta	KLK14	chr19	51072897	51087887
KLK14_chr19_51072897_51087887	0/0	c0005	756	6	0	0	6	0	0	copy fasta	KLK14	chr19	51072897	51087887
KLK14_chr19_51072897_51087887	0/0	c0006	756	5	5	0	0	0	0	copy fasta	KLK14	chr19	51072897	51087887
KLK14_chr19_51072897_51087887	0/0	c0007	756	4	4	0	0	0	0	copy fasta	KLK14	chr19	51072897	51087887
KLK14_chr19_51072897_51087887	0/0	c0008	756	2	0	0	0	0	2	copy fasta	KLK14	chr19	51072897	51087887
KLK14_chr19_51072897_51087887	0/0	c0009	756	2	0	0	2	0	0	copy fasta	KLK14	chr19	51072897	51087887
KLK14_chr19_51072897_51087887	0/0	c0010	756	2	2	0	0	0	0	copy fasta	KLK14	chr19	51072897	51087887
KLK14_chr19_51072897_51087887	0/0	c0011	756	2	2	0	0	0	0	copy fasta	KLK14	chr19	51072897	51087887
KLK14_chr19_51072897_51087887	0/0	c0012	756	2	2	0	0	0	0	copy fasta	KLK14	chr19	51072897	51087887
KLK14_chr19_51072897_51087887	0/0	c0013	756	1	0	0	1	0	0	copy fasta	KLK14	chr19	51072897	51087887
KLK14_chr19_51072897_51087887	0/0	c0014	756	1	0	1	0	0	0	copy fasta	KLK14	chr19	51072897	51087887
KLK14_chr19_51072897_51087887	0/0	c0015	756	1	0	0	1	0	0	copy fasta	KLK14	chr19	51072897	51087887
KLK14_chr19_51072897_51087887	0/0	c0016	756	1	1	0	0	0	0	copy fasta	KLK14	chr19	51072897	51087887
KLK14_chr19_51072897_51087887	0/0	c0017	756	1	0	1	0	0	0	copy fasta	KLK14	chr19	51072897	51087887
KLK14_chr19_51072897_51087887	0/0	c0018	756	1	0	0	0	0	1	copy fasta	KLK14	chr19	51072897	51087887
KLK14_chr19_51072897_51087887	0/0	c0019	756	1	0	1	0	0	0	copy fasta	KLK14	chr19	51072897	51087887
KLK14_chr19_51072897_51087887	0/0	c0020	756	1	1	0	0	0	0	copy fasta	KLK14	chr19	51072897	51087887
KLK15_chr19_50820289_50838574	1/0	c0001	771	289	71	50	124	8	35	copy fasta	KLK15	chr19	50820289	50838574
KLK15_chr19_50820289_50838574	0/1	c0002	771	128	7	30	71	6	13	copy fasta	KLK15	chr19	50820289	50838574
KLK15_chr19_50820289_50838574	0/0	c0003	771	6	6	0	0	0	0	copy fasta	KLK15	chr19	50820289	50838574
KLK15_chr19_50820289_50838574	0/0	c0004	771	4	4	0	0	0	0	copy fasta	KLK15	chr19	50820289	50838574
KLK15_chr19_50820289_50838574	0/0	c0005	771	3	0	2	0	1	0	copy fasta	KLK15	chr19	50820289	50838574
KLK15_chr19_50820289_50838574	0/0	c0006	771	3	3	0	0	0	0	copy fasta	KLK15	chr19	50820289	50838574
KLK15_chr19_50820289_50838574	0/0	c0007	771	2	0	1	0	1	0	copy fasta	KLK15	chr19	50820289	50838574
KLK15_chr19_50820289_50838574	0/0	c0008	617	2	1	1	0	0	0	copy fasta	KLK15	chr19	50820289	50838574
KLK15_chr19_50820289_50838574	0/0	c0009	771	1	1	0	0	0	0	copy fasta	KLK15	chr19	50820289	50838574
KLK15_chr19_50820289_50838574	0/0	c0010	771	1	1	0	0	0	0	copy fasta	KLK15	chr19	50820289	50838574
KLK15_chr19_50820289_50838574	0/0	c0011	771	1	1	0	0	0	0	copy fasta	KLK15	chr19	50820289	50838574
KLK15_chr19_50820289_50838574	0/0	c0012	771	1	1	0	0	0	0	copy fasta	KLK15	chr19	50820289	50838574
KLK15_chr19_50820289_50838574	0/0	c0013	771	1	0	0	1	0	0	copy fasta	KLK15	chr19	50820289	50838574
KLK1_chr19_50814146_50828787	0/0	c0001	789	148	40	29	58	6	15	copy fasta	KLK1	chr19	50814146	50828787
KLK1_chr19_50814146_50828787	0/1	c0002	789	135	9	27	77	7	14	copy fasta	KLK1	chr19	50814146	50828787
KLK1_chr19_50814146_50828787	1/0	c0003	789	109	23	22	41	5	17	copy fasta	KLK1	chr19	50814146	50828787
KLK1_chr19_50814146_50828787	0/0	c0004	789	13	12	1	0	0	0	copy fasta	KLK1	chr19	50814146	50828787
KLK1_chr19_50814146_50828787	0/0	c0005	789	12	11	1	0	0	0	copy fasta	KLK1	chr19	50814146	50828787
KLK1_chr19_50814146_50828787	0/0	c0006	789	2	1	1	0	0	0	copy fasta	KLK1	chr19	50814146	50828787
KLK1_chr19_50814146_50828787	0/0	c0007	789	1	0	0	1	0	0	copy fasta	KLK1	chr19	50814146	50828787
KLK1_chr19_50814146_50828787	0/0	c0008	789	1	0	0	1	0	0	copy fasta	KLK1	chr19	50814146	50828787
KLK1_chr19_50814146_50828787	0/0	c0009	806	1	0	1	0	0	0	copy fasta	KLK1	chr19	50814146	50828787
KLK2_chr19_50868439_50885567	1/1	c0001	786	252	26	46	140	10	28	copy fasta	KLK2	chr19	50868439	50885567
KLK2_chr19_50868439_50885567	0/0	c0002	786	97	30	14	38	6	9	copy fasta	KLK2	chr19	50868439	50885567
KLK2_chr19_50868439_50885567	0/0	c0003	786	75	23	13	25	2	12	copy fasta	KLK2	chr19	50868439	50885567
KLK2_chr19_50868439_50885567	0/0	c0004	786	16	6	8	2	0	0	copy fasta	KLK2	chr19	50868439	50885567
KLK2_chr19_50868439_50885567	0/0	c0005	786	7	5	2	0	0	0	copy fasta	KLK2	chr19	50868439	50885567
KLK2_chr19_50868439_50885567	0/0	c0006	786	3	3	0	0	0	0	copy fasta	KLK2	chr19	50868439	50885567
KLK2_chr19_50868439_50885567	0/0	c0007	786	1	1	0	0	0	0	copy fasta	KLK2	chr19	50868439	50885567
KLK2_chr19_50868439_50885567	0/0	c0008	786	1	0	0	0	0	1	copy fasta	KLK2	chr19	50868439	50885567
KLK2_chr19_50868439_50885567	0/0	c0009	786	1	0	1	0	0	0	copy fasta	KLK2	chr19	50868439	50885567