JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KLK2_chr19_50868439_50885567	0/0	c0010	786	1	1	0	0	0	0	copy fasta	KLK2	chr19	50868439	50885567
KLK2_chr19_50868439_50885567	0/0	c0011	786	1	1	0	0	0	0	copy fasta	KLK2	chr19	50868439	50885567
KLK2_chr19_50868439_50885567	0/0	c0012	786	1	0	0	1	0	0	copy fasta	KLK2	chr19	50868439	50885567
KLK3_chr19_50849915_50865764	1/1	c0001	786	228	55	32	106	7	26	copy fasta	KLK3	chr19	50849915	50865764
KLK3_chr19_50849915_50865764	0/0	c0002	786	139	7	29	84	6	13	copy fasta	KLK3	chr19	50849915	50865764
KLK3_chr19_50849915_50865764	0/0	c0003	786	23	6	3	14	0	0	copy fasta	KLK3	chr19	50849915	50865764
KLK3_chr19_50849915_50865764	0/0	c0004	786	20	16	4	0	0	0	copy fasta	KLK3	chr19	50849915	50865764
KLK3_chr19_50849915_50865764	0/0	c0005	786	16	0	6	0	4	6	copy fasta	KLK3	chr19	50849915	50865764
KLK3_chr19_50849915_50865764	0/0	c0006	786	9	0	8	1	0	0	copy fasta	KLK3	chr19	50849915	50865764
KLK3_chr19_50849915_50865764	0/0	c0007	786	7	0	2	0	0	5	copy fasta	KLK3	chr19	50849915	50865764
KLK3_chr19_50849915_50865764	0/0	c0008	786	3	3	0	0	0	0	copy fasta	KLK3	chr19	50849915	50865764
KLK3_chr19_50849915_50865764	0/0	c0009	786	3	2	0	1	0	0	copy fasta	KLK3	chr19	50849915	50865764
KLK3_chr19_50849915_50865764	0/0	c0010	786	2	2	0	0	0	0	copy fasta	KLK3	chr19	50849915	50865764
KLK3_chr19_50849915_50865764	0/0	c0011	786	2	2	0	0	0	0	copy fasta	KLK3	chr19	50849915	50865764
KLK3_chr19_50849915_50865764	0/0	c0012	786	1	1	0	0	0	0	copy fasta	KLK3	chr19	50849915	50865764
KLK3_chr19_50849915_50865764	0/0	c0013	786	1	1	0	0	0	0	copy fasta	KLK3	chr19	50849915	50865764
KLK3_chr19_50849915_50865764	0/0	c0014	786	1	1	0	0	0	0	copy fasta	KLK3	chr19	50849915	50865764
KLK3_chr19_50849915_50865764	0/0	c0015	786	1	1	0	0	0	0	copy fasta	KLK3	chr19	50849915	50865764
KLK3_chr19_50849915_50865764	0/0	c0016	786	1	1	0	0	0	0	copy fasta	KLK3	chr19	50849915	50865764
KLK3_chr19_50849915_50865764	0/0	c0017	786	1	0	0	1	0	0	copy fasta	KLK3	chr19	50849915	50865764
KLK3_chr19_50849915_50865764	0/0	c0018	786	1	1	0	0	0	0	copy fasta	KLK3	chr19	50849915	50865764
KLK3_chr19_50849915_50865764	0/0	c0019	786	1	0	0	0	1	0	copy fasta	KLK3	chr19	50849915	50865764
KLK3_chr19_50849915_50865764	0/0	c0020	786	1	0	0	1	0	0	copy fasta	KLK3	chr19	50849915	50865764
KLK3_chr19_50849915_50865764	0/0	c0021	786	1	1	0	0	0	0	copy fasta	KLK3	chr19	50849915	50865764
KLK4_chr19_50901351_50916395	1/0	c0001	765	250	58	37	121	10	23	copy fasta	KLK4	chr19	50901351	50916395
KLK4_chr19_50901351_50916395	0/1	c0002	765	86	5	40	21	4	15	copy fasta	KLK4	chr19	50901351	50916395
KLK4_chr19_50901351_50916395	0/0	c0003	765	54	19	5	21	2	7	copy fasta	KLK4	chr19	50901351	50916395
KLK4_chr19_50901351_50916395	0/0	c0004	765	8	8	0	0	0	0	copy fasta	KLK4	chr19	50901351	50916395
KLK4_chr19_50901351_50916395	0/0	c0005	765	3	3	0	0	0	0	copy fasta	KLK4	chr19	50901351	50916395
KLK4_chr19_50901351_50916395	0/0	c0006	765	2	2	0	0	0	0	copy fasta	KLK4	chr19	50901351	50916395
KLK4_chr19_50901351_50916395	0/0	c0007	765	2	1	1	0	0	0	copy fasta	KLK4	chr19	50901351	50916395
KLK4_chr19_50901351_50916395	0/0	c0008	765	2	0	0	2	0	0	copy fasta	KLK4	chr19	50901351	50916395
KLK4_chr19_50901351_50916395	0/0	c0009	765	1	1	0	0	0	0	copy fasta	KLK4	chr19	50901351	50916395
KLK4_chr19_50901351_50916395	0/0	c0010	765	1	0	0	1	0	0	copy fasta	KLK4	chr19	50901351	50916395
KLK4_chr19_50901351_50916395	0/0	c0011	765	1	0	0	0	1	0	copy fasta	KLK4	chr19	50901351	50916395
KLK4_chr19_50901351_50916395	0/0	c0012	765	1	0	1	0	0	0	copy fasta	KLK4	chr19	50901351	50916395
KLK4_chr19_50901351_50916395	0/0	c0013	765	1	0	0	0	0	1	copy fasta	KLK4	chr19	50901351	50916395
KLK4_chr19_50901351_50916395	0/0	c0014	765	1	0	0	0	1	0	copy fasta	KLK4	chr19	50901351	50916395
KLK4_chr19_50901351_50916395	0/0	c0015	765	1	1	0	0	0	0	copy fasta	KLK4	chr19	50901351	50916395
KLK5_chr19_50938303_50958038	1/1	c0001	882	377	87	76	155	14	43	copy fasta	KLK5	chr19	50938303	50958038
KLK5_chr19_50938303_50958038	0/0	c0002	882	1	0	0	0	0	1	copy fasta	KLK5	chr19	50938303	50958038
KLK5_chr19_50938303_50958038	0/0	c0003	882	1	0	0	1	0	0	copy fasta	KLK5	chr19	50938303	50958038
KLK5_chr19_50938303_50958038	0/0	c0004	882	1	1	0	0	0	0	copy fasta	KLK5	chr19	50938303	50958038
KLK6_chr19_50953631_50974591	1/0	c0001	735	277	59	69	106	12	30	copy fasta	KLK6	chr19	50953631	50974591
KLK6_chr19_50953631_50974591	0/0	c0002	735	19	14	3	0	1	1	copy fasta	KLK6	chr19	50953631	50974591
KLK6_chr19_50953631_50974591	0/0	c0003	735	9	8	1	0	0	0	copy fasta	KLK6	chr19	50953631	50974591
KLK6_chr19_50953631_50974591	0/1	c0004	735	3	2	0	0	0	0	copy fasta	KLK6	chr19	50953631	50974591
KLK6_chr19_50953631_50974591	0/0	c0005	735	2	2	0	0	0	0	copy fasta	KLK6	chr19	50953631	50974591
KLK6_chr19_50953631_50974591	0/0	c0006	735	1	0	0	0	1	0	copy fasta	KLK6	chr19	50953631	50974591
KLK6_chr19_50953631_50974591	0/0	c0007	735	1	0	0	0	0	1	copy fasta	KLK6	chr19	50953631	50974591