JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KLK6_chr19_50953631_50974591	0/0	c0008	735	1	0	0	1	0	0	copy fasta	KLK6	chr19	50953631	50974591
KLK6_chr19_50953631_50974591	0/0	c0009	735	1	0	1	0	0	0	copy fasta	KLK6	chr19	50953631	50974591
KLK6_chr19_50953631_50974591	0/0	c0010	735	1	1	0	0	0	0	copy fasta	KLK6	chr19	50953631	50974591
KLK6_chr19_50953631_50974591	0/0	c0011	735	1	0	0	1	0	0	copy fasta	KLK6	chr19	50953631	50974591
KLK7_chr19_50971468_50988917	0/1	c0001	762	335	62	66	160	9	37	copy fasta	KLK7	chr19	50971468	50988917
KLK7_chr19_50971468_50988917	0/0	c0002	762	24	23	0	0	0	1	copy fasta	KLK7	chr19	50971468	50988917
KLK7_chr19_50971468_50988917	0/0	c0003	762	6	1	3	0	2	0	copy fasta	KLK7	chr19	50971468	50988917
KLK7_chr19_50971468_50988917	0/0	c0004	762	5	3	2	0	0	0	copy fasta	KLK7	chr19	50971468	50988917
KLK7_chr19_50971468_50988917	1/0	c0005	762	5	1	0	0	1	2	copy fasta	KLK7	chr19	50971468	50988917
KLK7_chr19_50971468_50988917	0/0	c0006	762	2	2	0	0	0	0	copy fasta	KLK7	chr19	50971468	50988917
KLK7_chr19_50971468_50988917	0/0	c0007	762	1	1	0	0	0	0	copy fasta	KLK7	chr19	50971468	50988917
KLK7_chr19_50971468_50988917	0/0	c0008	762	1	1	0	0	0	0	copy fasta	KLK7	chr19	50971468	50988917
KLK7_chr19_50971468_50988917	0/0	c0009	762	1	0	0	1	0	0	copy fasta	KLK7	chr19	50971468	50988917
KLK7_chr19_50971468_50988917	0/0	c0010	762	1	0	0	1	0	0	copy fasta	KLK7	chr19	50971468	50988917
KLK7_chr19_50971468_50988917	0/0	c0011	762	1	1	0	0	0	0	copy fasta	KLK7	chr19	50971468	50988917
KLK7_chr19_50971468_50988917	0/0	c0012	762	1	0	1	0	0	0	copy fasta	KLK7	chr19	50971468	50988917
KLK7_chr19_50971468_50988917	0/0	c0013	762	1	1	0	0	0	0	copy fasta	KLK7	chr19	50971468	50988917
KLK8_chr19_50991008_51006604	1/1	c0001	783	390	76	67	199	7	39	copy fasta	KLK8	chr19	50991008	51006604
KLK8_chr19_50991008_51006604	0/0	c0002	783	13	11	1	0	0	1	copy fasta	KLK8	chr19	50991008	51006604
KLK8_chr19_50991008_51006604	0/0	c0003	783	8	8	0	0	0	0	copy fasta	KLK8	chr19	50991008	51006604
KLK8_chr19_50991008_51006604	0/0	c0004	783	3	0	1	0	1	1	copy fasta	KLK8	chr19	50991008	51006604
KLK8_chr19_50991008_51006604	0/0	c0005	783	2	0	0	2	0	0	copy fasta	KLK8	chr19	50991008	51006604
KLK8_chr19_50991008_51006604	0/0	c0006	783	1	0	0	0	0	1	copy fasta	KLK8	chr19	50991008	51006604
KLK8_chr19_50991008_51006604	0/0	c0007	783	1	0	0	1	0	0	copy fasta	KLK8	chr19	50991008	51006604
KLK8_chr19_50991008_51006604	0/0	c0008	783	1	0	1	0	0	0	copy fasta	KLK8	chr19	50991008	51006604
KLK8_chr19_50991008_51006604	0/0	c0009	783	1	1	0	0	0	0	copy fasta	KLK8	chr19	50991008	51006604
KLK9_chr19_50997508_51014592	1/0	c0001	753	264	22	44	164	4	29	copy fasta	KLK9	chr19	50997508	51014592
KLK9_chr19_50997508_51014592	0/1	c0002	753	169	72	34	42	6	14	copy fasta	KLK9	chr19	50997508	51014592
KLK9_chr19_50997508_51014592	0/0	c0003	753	4	2	0	2	0	0	copy fasta	KLK9	chr19	50997508	51014592
KLK9_chr19_50997508_51014592	0/0	c0004	753	1	0	0	0	0	1	copy fasta	KLK9	chr19	50997508	51014592
KLKB1_chr4_186222507_186263471	0/0	c0001	1917	121	25	22	58	7	9	copy fasta	KLKB1	chr4	186222507	186263471
KLKB1_chr4_186222507_186263471	0/0	c0002	1917	101	23	20	49	0	9	copy fasta	KLKB1	chr4	186222507	186263471
KLKB1_chr4_186222507_186263471	1/0	c0003	1917	61	10	17	17	1	15	copy fasta	KLKB1	chr4	186222507	186263471
KLKB1_chr4_186222507_186263471	0/0	c0004	1917	58	0	10	41	6	1	copy fasta	KLKB1	chr4	186222507	186263471
KLKB1_chr4_186222507_186263471	0/1	c0005	1917	49	6	9	20	2	11	copy fasta	KLKB1	chr4	186222507	186263471
KLKB1_chr4_186222507_186263471	0/0	c0006	1917	10	9	1	0	0	0	copy fasta	KLKB1	chr4	186222507	186263471
KLKB1_chr4_186222507_186263471	0/0	c0007	1917	8	0	0	8	0	0	copy fasta	KLKB1	chr4	186222507	186263471
KLKB1_chr4_186222507_186263471	0/0	c0008	1917	5	3	2	0	0	0	copy fasta	KLKB1	chr4	186222507	186263471
KLKB1_chr4_186222507_186263471	0/0	c0009	1917	5	5	0	0	0	0	copy fasta	KLKB1	chr4	186222507	186263471
KLKB1_chr4_186222507_186263471	0/0	c0010	1917	2	2	0	0	0	0	copy fasta	KLKB1	chr4	186222507	186263471
KLKB1_chr4_186222507_186263471	0/0	c0011	1917	2	2	0	0	0	0	copy fasta	KLKB1	chr4	186222507	186263471
KLKB1_chr4_186222507_186263471	0/0	c0012	1917	2	2	0	0	0	0	copy fasta	KLKB1	chr4	186222507	186263471
KLKB1_chr4_186222507_186263471	0/0	c0013	1917	2	0	0	2	0	0	copy fasta	KLKB1	chr4	186222507	186263471
KLKB1_chr4_186222507_186263471	0/0	c0014	1917	1	0	1	0	0	0	copy fasta	KLKB1	chr4	186222507	186263471
KLKB1_chr4_186222507_186263471	0/0	c0015	1917	1	0	0	0	0	1	copy fasta	KLKB1	chr4	186222507	186263471
KLKB1_chr4_186222507_186263471	0/0	c0016	1917	1	1	0	0	0	0	copy fasta	KLKB1	chr4	186222507	186263471
KLKB1_chr4_186222507_186263471	0/0	c0017	1917	1	1	0	0	0	0	copy fasta	KLKB1	chr4	186222507	186263471
KLKB1_chr4_186222507_186263471	0/0	c0018	1917	1	0	0	1	0	0	copy fasta	KLKB1	chr4	186222507	186263471
KLKB1_chr4_186222507_186263471	0/0	c0019	1917	1	1	0	0	0	0	copy fasta	KLKB1	chr4	186222507	186263471
KLLN_chr10_87854158_87868533	1/1	c0001	537	414	92	73	196	12	39	copy fasta	KLLN	chr10	87854158	87868533