JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KLLN_chr10_87854158_87868533	0/0	c0002	537	6	0	0	6	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	c0003	537	3	0	0	3	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	c0004	537	2	0	0	2	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	c0005	537	1	1	0	0	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	c0006	537	1	0	0	1	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	c0007	537	1	1	0	0	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	c0008	537	1	0	1	0	0	0	copy fasta	KLLN	chr10	87854158	87868533
KLLN_chr10_87854158_87868533	0/0	c0009	537	1	0	0	0	0	1	copy fasta	KLLN	chr10	87854158	87868533
KLRB1_chr12_9589551_9612916	1/1	c0001	678	247	71	44	92	14	24	copy fasta	KLRB1	chr12	9589551	9612916
KLRB1_chr12_9589551_9612916	0/0	c0002	678	182	17	31	108	2	24	copy fasta	KLRB1	chr12	9589551	9612916
KLRB1_chr12_9589551_9612916	0/0	c0003	678	2	0	0	2	0	0	copy fasta	KLRB1	chr12	9589551	9612916
KLRB1_chr12_9589551_9612916	0/0	c0004	678	1	0	1	0	0	0	copy fasta	KLRB1	chr12	9589551	9612916
KLRB1_chr12_9589551_9612916	0/0	c0005	678	1	0	1	0	0	0	copy fasta	KLRB1	chr12	9589551	9612916
KLRB1_chr12_9589551_9612916	0/0	c0006	678	1	1	0	0	0	0	copy fasta	KLRB1	chr12	9589551	9612916
KLRB1_chr12_9589551_9612916	0/0	c0007	678	1	0	1	0	0	0	copy fasta	KLRB1	chr12	9589551	9612916
KLRB1_chr12_9589551_9612916	0/0	c0008	678	1	1	0	0	0	0	copy fasta	KLRB1	chr12	9589551	9612916
KLRC1_chr12_10441028_10458377	0/1	c0001	702	432	94	73	208	16	40	copy fasta	KLRC1	chr12	10441028	10458377
KLRC1_chr12_10441028_10458377	1/0	c0002	702	5	4	0	0	0	0	copy fasta	KLRC1	chr12	10441028	10458377
KLRC1_chr12_10441028_10458377	0/0	c0003	702	1	0	1	0	0	0	copy fasta	KLRC1	chr12	10441028	10458377
KLRC1_chr12_10441028_10458377	0/0	c0004	702	1	0	0	1	0	0	copy fasta	KLRC1	chr12	10441028	10458377
KLRC1_chr12_10441028_10458377	0/0	c0005	702	1	0	0	1	0	0	copy fasta	KLRC1	chr12	10441028	10458377
KLRC2_chr12_10425599_10441010	0/0	c0000	0	64	18	7	33	1	5	copy fasta	KLRC2	chr12	10425599	10441010
KLRC2_chr12_10425599_10441010	0/0	c0001	696	204	18	40	112	13	21	copy fasta	KLRC2	chr12	10425599	10441010
KLRC2_chr12_10425599_10441010	1/0	c0002	696	154	58	33	44	2	16	copy fasta	KLRC2	chr12	10425599	10441010
KLRC2_chr12_10425599_10441010	0/0	c0003	696	2	2	0	0	0	0	copy fasta	KLRC2	chr12	10425599	10441010
KLRC2_chr12_10425599_10441010	0/0	c0004	696	1	0	0	1	0	0	copy fasta	KLRC2	chr12	10425599	10441010
KLRC3_chr12_10407315_10425595	0/1	c0001	723	219	67	38	89	3	21	copy fasta	KLRC3	chr12	10407315	10425595
KLRC3_chr12_10407315_10425595	0/0	c0002	723	207	20	41	111	14	21	copy fasta	KLRC3	chr12	10407315	10425595
KLRC3_chr12_10407315_10425595	0/0	c0003	723	7	6	1	0	0	0	copy fasta	KLRC3	chr12	10407315	10425595
KLRC3_chr12_10407315_10425595	1/0	c0004	723	5	4	0	0	0	0	copy fasta	KLRC3	chr12	10407315	10425595
KLRC3_chr12_10407315_10425595	0/0	c0005	723	3	0	0	3	0	0	copy fasta	KLRC3	chr12	10407315	10425595
KLRC3_chr12_10407315_10425595	0/0	c0006	723	2	0	1	0	1	0	copy fasta	KLRC3	chr12	10407315	10425595
KLRC3_chr12_10407315_10425595	0/0	c0007	723	2	0	0	0	0	2	copy fasta	KLRC3	chr12	10407315	10425595
KLRC3_chr12_10407315_10425595	0/0	c0008	723	1	0	0	1	0	0	copy fasta	KLRC3	chr12	10407315	10425595
KLRC3_chr12_10407315_10425595	0/0	c0009	667	1	0	1	0	0	0	copy fasta	KLRC3	chr12	10407315	10425595
KLRC3_chr12_10407315_10425595	0/0	c0010	392	1	1	0	0	0	0	copy fasta	KLRC3	chr12	10407315	10425595
KLRC4_chr12_10402384_10414757	0/0	c0001	477	210	20	44	109	13	24	copy fasta	KLRC4	chr12	10402384	10414757
KLRC4_chr12_10402384_10414757	1/1	c0002	477	114	27	19	57	3	6	copy fasta	KLRC4	chr12	10402384	10414757
KLRC4_chr12_10402384_10414757	0/0	c0003	477	85	26	13	30	0	16	copy fasta	KLRC4	chr12	10402384	10414757
KLRC4_chr12_10402384_10414757	0/0	c0004	477	31	25	6	0	0	0	copy fasta	KLRC4	chr12	10402384	10414757
KLRC4_chr12_10402384_10414757	0/0	c0005	477	6	0	0	6	0	0	copy fasta	KLRC4	chr12	10402384	10414757
KLRD1_chr12_10302870_10334608	0/1	c0001	540	391	74	67	195	10	44	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	1/0	c0002	540	32	24	7	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	c0003	540	3	0	3	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	c0004	540	1	0	1	0	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRD1_chr12_10302870_10334608	0/0	c0005	540	1	0	0	1	0	0	copy fasta	KLRD1	chr12	10302870	10334608
KLRF1_chr12_9822481_9850005	1/1	c0001	696	347	85	68	138	16	38	copy fasta	KLRF1	chr12	9822481	9850005
KLRF1_chr12_9822481_9850005	0/0	c0002	696	36	11	10	9	2	4	copy fasta	KLRF1	chr12	9822481	9850005
KLRF1_chr12_9822481_9850005	0/0	c0003	696	3	0	0	0	0	3	copy fasta	KLRF1	chr12	9822481	9850005
KLRF1_chr12_9822481_9850005	0/0	c0004	696	1	0	0	0	0	1	copy fasta	KLRF1	chr12	9822481	9850005