JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KLRF1_chr12_9822481_9850005	0/0	c0005	696	1	0	0	1	0	0	copy fasta	KLRF1	chr12	9822481	9850005
KLRF2_chr12_9876489_9900833	0/1	c0001	624	201	29	52	76	12	31	copy fasta	KLRF2	chr12	9876489	9900833
KLRF2_chr12_9876489_9900833	1/0	c0002	624	125	35	17	61	3	8	copy fasta	KLRF2	chr12	9876489	9900833
KLRF2_chr12_9876489_9900833	0/0	c0003	624	91	32	8	46	0	5	copy fasta	KLRF2	chr12	9876489	9900833
KLRF2_chr12_9876489_9900833	0/0	c0004	624	14	0	0	14	0	0	copy fasta	KLRF2	chr12	9876489	9900833
KLRF2_chr12_9876489_9900833	0/0	c0005	624	7	1	1	0	3	2	copy fasta	KLRF2	chr12	9876489	9900833
KLRF2_chr12_9876489_9900833	0/0	c0006	624	1	1	0	0	0	0	copy fasta	KLRF2	chr12	9876489	9900833
KLRF2_chr12_9876489_9900833	0/0	c0007	624	1	0	0	1	0	0	copy fasta	KLRF2	chr12	9876489	9900833
KLRG1_chr12_8984546_9015751	1/0	c0001	570	216	72	36	76	7	24	copy fasta	KLRG1	chr12	8984546	9015751
KLRG1_chr12_8984546_9015751	0/0	c0002	570	97	4	18	63	2	10	copy fasta	KLRG1	chr12	8984546	9015751
KLRG1_chr12_8984546_9015751	0/1	c0003	570	36	7	8	11	4	5	copy fasta	KLRG1	chr12	8984546	9015751
KLRG1_chr12_8984546_9015751	0/0	c0004	570	15	1	2	10	1	1	copy fasta	KLRG1	chr12	8984546	9015751
KLRG2_chr7_139447690_139488673	1/1	c0001	1230	118	2	32	64	2	16	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	c0002	1230	83	8	7	60	2	6	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	c0003	1230	54	20	8	15	6	5	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	c0004	1230	39	7	2	28	0	2	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	c0005	1230	24	13	7	0	2	2	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	c0006	1230	24	14	8	0	0	2	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	c0007	1230	17	4	3	7	1	2	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	c0008	1230	12	5	3	0	1	3	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	c0009	1230	11	3	0	5	2	1	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	c0010	1230	4	4	0	0	0	0	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	c0011	1230	3	0	0	3	0	0	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	c0012	1230	1	0	0	1	0	0	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	c0013	1230	1	1	0	0	0	0	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	c0014	1230	1	0	0	1	0	0	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	c0015	1230	1	1	0	0	0	0	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	c0016	1230	1	1	0	0	0	0	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	c0017	1230	1	1	0	0	0	0	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	c0018	1230	1	1	0	0	0	0	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	c0019	1230	1	1	0	0	0	0	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	c0020	1230	1	1	0	0	0	0	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	c0021	1230	1	1	0	0	0	0	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	c0022	1230	1	1	0	0	0	0	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	c0023	1230	1	0	0	0	0	1	copy fasta	KLRG2	chr7	139447690	139488673
KLRG2_chr7_139447690_139488673	0/0	c0024	1230	1	1	0	0	0	0	copy fasta	KLRG2	chr7	139447690	139488673
KLRK1_chr12_10367353_10395041	0/0	c0001	651	299	48	57	147	15	32	copy fasta	KLRK1	chr12	10367353	10395041
KLRK1_chr12_10367353_10395041	1/1	c0002	651	76	40	11	17	1	5	copy fasta	KLRK1	chr12	10367353	10395041
KLRK1_chr12_10367353_10395041	0/0	c0003	651	29	6	11	8	1	3	copy fasta	KLRK1	chr12	10367353	10395041
KLRK1_chr12_10367353_10395041	0/0	c0004	651	24	0	1	23	0	0	copy fasta	KLRK1	chr12	10367353	10395041
KLRK1_chr12_10367353_10395041	0/0	c0005	651	5	0	0	5	0	0	copy fasta	KLRK1	chr12	10367353	10395041
KLRK1_chr12_10367353_10395041	0/0	c0006	651	1	0	1	0	0	0	copy fasta	KLRK1	chr12	10367353	10395041
KLRK1_chr12_10367353_10395041	0/0	c0007	651	1	0	0	0	1	0	copy fasta	KLRK1	chr12	10367353	10395041
KLRK1_chr12_10367353_10395041	0/0	c0008	651	1	0	0	1	0	0	copy fasta	KLRK1	chr12	10367353	10395041
KLRK1_chr12_10367353_10395041	0/0	c0009	651	1	0	0	1	0	0	copy fasta	KLRK1	chr12	10367353	10395041
KLRK1_chr12_10367353_10395041	0/0	c0010	651	1	0	1	0	0	0	copy fasta	KLRK1	chr12	10367353	10395041
KL_chr13_33011423_33071143	0/1	c0001	3039	119	16	14	75	2	11	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	c0002	3039	86	5	22	36	6	17	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	c0003	3039	85	19	10	50	2	4	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	c0004	3039	24	0	7	16	0	1	copy fasta	KL	chr13	33011423	33071143