JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KL_chr13_33011423_33071143	0/0	c0005	3039	23	11	5	0	1	6	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	c0006	3039	10	10	0	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	c0007	3039	5	5	0	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	1/0	c0008	3039	5	4	0	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	c0009	3039	4	4	0	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	c0010	3039	4	4	0	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	c0011	3039	3	3	0	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	c0012	3039	2	2	0	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	c0013	3039	2	1	1	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	c0014	3039	2	1	1	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	c0015	3039	2	1	0	0	1	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	c0016	3039	2	2	0	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	c0017	3039	2	2	0	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	c0018	3039	1	1	0	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	c0019	3039	1	0	1	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	c0020	3039	1	1	0	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	c0021	3039	1	1	0	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	c0022	3039	1	0	0	0	0	1	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	c0023	3039	1	0	0	1	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	c0024	3039	1	0	1	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	c0025	3039	1	0	0	1	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	c0026	3039	1	0	0	1	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	c0027	3039	1	0	0	1	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	c0028	3039	1	0	0	1	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	c0029	3039	1	1	0	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	c0030	3039	1	1	0	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	c0031	3039	1	0	1	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	c0032	3039	1	1	0	0	0	0	copy fasta	KL	chr13	33011423	33071143
KL_chr13_33011423_33071143	0/0	c0033	3039	1	0	1	0	0	0	copy fasta	KL	chr13	33011423	33071143
KMO_chr1_241527378_241600642	1/1	c0001	1461	198	39	36	93	9	19	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	c0002	1461	120	33	25	44	3	15	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	c0003	1461	29	0	6	9	4	10	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	c0004	1461	27	5	0	21	0	1	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	c0005	1461	22	8	2	11	0	1	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	c0006	1461	4	0	1	3	0	0	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	c0007	1461	3	3	0	0	0	0	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	c0008	1461	3	0	0	3	0	0	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	c0009	1461	3	0	0	3	0	0	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	c0010	1461	2	2	0	0	0	0	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	c0011	1461	2	2	0	0	0	0	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	c0012	1461	2	2	0	0	0	0	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	c0013	1461	1	0	0	1	0	0	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	c0014	1461	1	0	0	1	0	0	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	c0015	1461	1	0	0	0	0	1	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	c0016	1461	1	1	0	0	0	0	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	c0017	1461	1	0	0	1	0	0	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	c0018	1461	1	0	0	0	0	1	copy fasta	KMO	chr1	241527378	241600642
KMO_chr1_241527378_241600642	0/0	c0019	1461	1	1	0	0	0	0	copy fasta	KMO	chr1	241527378	241600642
KMT2A_chr11_118431492_118531832	1/0	c0001	11919	141	57	11	50	0	22	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/1	c0002	11919	15	0	3	9	0	2	copy fasta	KMT2A	chr11	118431492	118531832