JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KMT2A_chr11_118431492_118531832	0/0	c0003	11919	6	6	0	0	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	c0004	11919	3	3	0	0	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	c0005	11919	3	2	1	0	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	c0006	11919	3	0	0	3	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	c0007	11919	3	0	0	3	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	c0008	11925	2	0	0	2	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	c0009	11919	2	0	0	2	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	c0010	11919	2	0	0	2	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	c0011	11919	2	0	0	2	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	c0012	11919	1	0	0	1	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	c0013	11919	1	0	0	0	0	1	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	c0014	11919	1	1	0	0	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	c0015	11919	1	1	0	0	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	c0016	11919	1	1	0	0	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	c0017	11919	1	0	0	1	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	c0018	11919	1	0	0	1	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	c0019	11919	1	0	0	0	0	1	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	c0020	11919	1	1	0	0	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	c0021	11919	1	1	0	0	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	c0022	11919	1	1	0	0	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	c0023	11919	1	0	0	0	0	1	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	c0024	11919	1	0	0	0	0	1	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	c0025	11919	1	1	0	0	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	c0026	11919	1	1	0	0	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	c0027	11919	1	0	0	1	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	c0028	11919	1	0	0	1	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2A_chr11_118431492_118531832	0/0	c0029	11919	1	0	1	0	0	0	copy fasta	KMT2A	chr11	118431492	118531832
KMT2B_chr19_35713003_35743878	1/0	c0001	8148	127	13	36	58	6	13	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/1	c0002	8148	75	21	19	28	1	5	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0003	8148	70	17	3	31	3	16	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0004	8148	33	5	7	12	4	5	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0005	8148	12	8	1	2	0	1	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0006	8148	10	4	0	6	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0007	8149	7	0	0	6	0	1	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0008	8145	4	4	0	0	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0009	8148	3	3	0	0	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0010	8148	3	0	0	3	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0011	8148	2	0	0	0	0	2	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0012	8148	2	2	0	0	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0013	8148	2	1	1	0	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0014	8148	2	2	0	0	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0015	8149	2	0	0	2	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0016	8148	2	1	1	0	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0017	8149	2	0	0	2	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0018	8148	2	2	0	0	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0019	8149	2	0	0	2	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0020	8148	2	0	0	2	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0021	8148	1	0	0	0	0	1	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0022	8148	1	0	1	0	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0023	8148	1	0	0	1	0	0	copy fasta	KMT2B	chr19	35713003	35743878