JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AMPD1_chr1_114668098_114700546	0/0	c0002	2244	4	4	0	0	0	0	copy fasta	AMPD1	chr1	114668098	114700546
AMPD1_chr1_114668098_114700546	0/0	c0003	2244	4	0	3	0	0	1	copy fasta	AMPD1	chr1	114668098	114700546
AMPD1_chr1_114668098_114700546	0/0	c0004	2244	3	0	3	0	0	0	copy fasta	AMPD1	chr1	114668098	114700546
AMPD1_chr1_114668098_114700546	0/0	c0005	2244	2	0	2	0	0	0	copy fasta	AMPD1	chr1	114668098	114700546
AMPD1_chr1_114668098_114700546	0/0	c0006	2244	2	2	0	0	0	0	copy fasta	AMPD1	chr1	114668098	114700546
AMPD1_chr1_114668098_114700546	0/0	c0007	2244	2	0	0	2	0	0	copy fasta	AMPD1	chr1	114668098	114700546
AMPD1_chr1_114668098_114700546	0/0	c0008	2244	2	0	0	2	0	0	copy fasta	AMPD1	chr1	114668098	114700546
AMPD1_chr1_114668098_114700546	0/0	c0009	2244	2	2	0	0	0	0	copy fasta	AMPD1	chr1	114668098	114700546
AMPD1_chr1_114668098_114700546	0/0	c0010	2244	2	2	0	0	0	0	copy fasta	AMPD1	chr1	114668098	114700546
AMPD1_chr1_114668098_114700546	0/0	c0011	2244	1	1	0	0	0	0	copy fasta	AMPD1	chr1	114668098	114700546
AMPD1_chr1_114668098_114700546	0/0	c0012	2244	1	0	0	0	0	1	copy fasta	AMPD1	chr1	114668098	114700546
AMPD1_chr1_114668098_114700546	0/0	c0013	2244	1	0	0	0	0	1	copy fasta	AMPD1	chr1	114668098	114700546
AMPD1_chr1_114668098_114700546	0/0	c0014	2244	1	1	0	0	0	0	copy fasta	AMPD1	chr1	114668098	114700546
AMPD1_chr1_114668098_114700546	0/0	c0015	2244	1	1	0	0	0	0	copy fasta	AMPD1	chr1	114668098	114700546
AMPD1_chr1_114668098_114700546	0/0	c0016	2244	1	1	0	0	0	0	copy fasta	AMPD1	chr1	114668098	114700546
AMPD1_chr1_114668098_114700546	0/0	c0017	2244	1	0	0	1	0	0	copy fasta	AMPD1	chr1	114668098	114700546
AMPD1_chr1_114668098_114700546	0/0	c0018	2244	1	0	0	1	0	0	copy fasta	AMPD1	chr1	114668098	114700546
AMPD1_chr1_114668098_114700546	0/0	c0019	2244	1	0	0	0	0	1	copy fasta	AMPD1	chr1	114668098	114700546
AMPD1_chr1_114668098_114700546	0/0	c0020	2244	1	0	1	0	0	0	copy fasta	AMPD1	chr1	114668098	114700546
AMPD1_chr1_114668098_114700546	0/0	c0021	2244	1	1	0	0	0	0	copy fasta	AMPD1	chr1	114668098	114700546
AMPD2_chr1_109614837_109637051	0/1	c0001	2478	232	47	39	114	10	21	copy fasta	AMPD2	chr1	109614837	109637051
AMPD2_chr1_109614837_109637051	0/0	c0002	2478	84	20	2	51	2	9	copy fasta	AMPD2	chr1	109614837	109637051
AMPD2_chr1_109614837_109637051	1/0	c0003	2478	52	16	18	4	4	9	copy fasta	AMPD2	chr1	109614837	109637051
AMPD2_chr1_109614837_109637051	0/0	c0004	2478	8	7	1	0	0	0	copy fasta	AMPD2	chr1	109614837	109637051
AMPD2_chr1_109614837_109637051	0/0	c0005	2478	6	2	0	0	0	4	copy fasta	AMPD2	chr1	109614837	109637051
AMPD2_chr1_109614837_109637051	0/0	c0006	2478	1	1	0	0	0	0	copy fasta	AMPD2	chr1	109614837	109637051
AMPD2_chr1_109614837_109637051	0/0	c0007	2478	1	0	0	0	0	1	copy fasta	AMPD2	chr1	109614837	109637051
AMPD2_chr1_109614837_109637051	0/0	c0008	2478	1	1	0	0	0	0	copy fasta	AMPD2	chr1	109614837	109637051
AMPD2_chr1_109614837_109637051	0/0	c0009	2478	1	0	0	1	0	0	copy fasta	AMPD2	chr1	109614837	109637051
AMPD2_chr1_109614837_109637051	0/0	c0010	2478	1	0	0	1	0	0	copy fasta	AMPD2	chr1	109614837	109637051
AMPD2_chr1_109614837_109637051	0/0	c0011	2478	1	0	0	1	0	0	copy fasta	AMPD2	chr1	109614837	109637051
AMPD3_chr11_10450264_10512579	1/0	c0001	2304	188	50	39	66	10	22	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/1	c0002	2304	127	3	23	80	4	16	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	c0003	2304	32	23	5	0	2	2	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	c0004	2304	6	0	0	6	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	c0005	2304	5	0	0	5	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	c0006	2304	3	3	0	0	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	c0007	2304	3	0	1	0	1	1	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	c0008	2304	3	0	1	0	1	1	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	c0009	2304	3	0	2	0	0	1	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	c0010	2304	2	0	1	0	0	1	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	c0011	2304	2	2	0	0	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	c0012	2304	2	2	0	0	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	c0013	2304	2	2	0	0	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	c0014	2304	2	2	0	0	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	c0015	2304	1	1	0	0	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	c0016	2304	1	1	0	0	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	c0017	2304	1	1	0	0	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	c0018	2304	1	1	0	0	0	0	copy fasta	AMPD3	chr11	10450264	10512579
AMPD3_chr11_10450264_10512579	0/0	c0019	2304	1	1	0	0	0	0	copy fasta	AMPD3	chr11	10450264	10512579