JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KMT2B_chr19_35713003_35743878	0/0	c0024	8148	1	1	0	0	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0025	8148	1	0	0	1	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0026	8149	1	0	1	0	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0027	8149	1	0	0	0	0	1	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0028	8148	1	1	0	0	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0029	8148	1	0	0	0	0	1	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0030	8148	1	0	1	0	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0031	8148	1	1	0	0	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0032	8148	1	0	0	1	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0033	8148	1	0	0	1	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0034	8148	1	0	1	0	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0035	8148	1	0	0	1	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0036	8148	1	1	0	0	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0037	8148	1	1	0	0	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0038	8149	1	0	0	1	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0039	8148	1	1	0	0	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0040	8148	1	0	0	1	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0041	8148	1	0	1	0	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0042	8148	1	0	0	0	0	1	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0043	8148	1	0	0	0	0	1	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0044	8148	1	1	0	0	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0045	8148	1	0	1	0	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0046	8148	1	1	0	0	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0047	8149	1	1	0	0	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0048	8148	1	1	0	0	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0049	8148	1	0	0	1	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0050	8148	1	1	0	0	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0051	8148	1	1	0	0	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2B_chr19_35713003_35743878	0/0	c0052	8148	1	1	0	0	0	0	copy fasta	KMT2B	chr19	35713003	35743878
KMT2C_chr7_152129925_152441003	1/1	c0001	14736	47	13	8	18	1	5	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	c0002	14736	29	7	6	11	0	5	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	c0003	14736	23	13	2	7	0	1	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	c0004	14736	9	7	2	0	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	c0005	14736	9	9	0	0	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	c0006	14736	7	0	0	7	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	c0007	14736	6	5	1	0	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	c0008	14736	4	3	1	0	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	c0009	14736	3	3	0	0	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	c0010	14736	2	2	0	0	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	c0011	14736	2	0	0	2	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	c0012	14736	2	1	1	0	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	c0013	14736	2	2	0	0	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	c0014	14736	2	0	0	1	0	1	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	c0015	14736	2	2	0	0	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	c0016	14736	2	2	0	0	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	c0017	14736	1	1	0	0	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	c0018	14736	1	0	0	1	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	c0019	14736	1	0	0	1	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	c0020	14736	1	1	0	0	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	c0021	14750	1	0	0	1	0	0	copy fasta	KMT2C	chr7	152129925	152441003