JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KMT2C_chr7_152129925_152441003	0/0	c0022	14736	1	1	0	0	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	c0023	14736	1	1	0	0	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	c0024	14736	1	1	0	0	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	c0025	14736	1	1	0	0	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	c0026	14736	1	1	0	0	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	c0027	14736	1	0	0	1	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	c0028	14736	1	1	0	0	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	c0029	14736	1	0	0	0	1	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	c0030	14736	1	0	0	0	0	1	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	c0031	14736	1	1	0	0	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	c0032	14736	1	0	0	0	0	1	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	c0033	14736	1	1	0	0	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	c0034	14736	1	0	0	0	0	1	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	c0035	14736	1	0	1	0	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	c0036	14736	1	0	0	0	0	1	copy fasta	KMT2C	chr7	152129925	152441003
KMT2C_chr7_152129925_152441003	0/0	c0037	14736	1	1	0	0	0	0	copy fasta	KMT2C	chr7	152129925	152441003
KMT2D_chr12_49013978_49065794	1/0	c0001	16614	65	16	8	34	3	3	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0002	16614	56	3	13	28	5	7	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0003	16614	37	5	9	18	0	5	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0004	16614	14	14	0	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0005	16614	10	0	0	10	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0006	16614	6	6	0	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0007	16614	5	4	1	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0008	16614	5	5	0	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0009	16587	4	2	2	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0010	16614	4	4	0	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0011	16614	4	0	2	0	1	1	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0012	16614	4	0	2	0	1	1	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0013	16614	4	0	4	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0014	16614	4	0	0	4	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0015	16614	4	1	3	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0016	16614	4	0	0	4	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0017	16614	3	0	0	2	0	1	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0018	16614	2	2	0	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0019	16587	2	2	0	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0020	16614	2	1	1	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0021	16614	2	2	0	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0022	16614	2	0	0	2	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0023	16614	1	0	0	0	0	1	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0024	16614	1	1	0	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0025	16614	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0026	16614	1	1	0	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0027	16614	1	1	0	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0028	16614	1	1	0	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0029	16587	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0030	16614	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/1	c0031	16614	1	0	0	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0032	16614	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0033	16614	1	1	0	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0034	16614	1	1	0	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794