JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KMT2D_chr12_49013978_49065794	0/0	c0035	16614	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0036	16614	1	1	0	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0037	16614	1	0	1	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0038	16614	1	0	1	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0039	16614	1	1	0	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0040	16614	1	1	0	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0041	16614	1	0	0	0	0	1	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0042	16614	1	0	1	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0043	16614	1	1	0	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0044	16614	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0045	16635	1	0	0	0	0	1	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0046	16614	1	1	0	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0047	16614	1	0	1	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0048	16614	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0049	16614	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0050	16614	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0051	16614	1	0	0	0	0	1	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0052	16614	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0053	16614	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0054	16614	1	0	0	0	0	1	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0055	16614	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0056	16614	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0057	16603	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0058	16614	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0059	16614	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0060	16614	1	1	0	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0061	16614	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0062	16614	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0063	16614	1	0	0	0	0	1	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0064	16614	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0065	16614	1	0	1	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0066	16614	1	0	1	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0067	16614	1	0	1	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0068	16614	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0069	16614	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0070	16614	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0071	16614	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0072	16614	1	0	0	0	0	1	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0073	16614	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0074	16614	1	1	0	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0075	16587	1	1	0	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0076	16614	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0077	16614	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0078	16626	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0079	16614	1	0	0	1	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0080	16614	1	0	0	0	0	1	copy fasta	KMT2D	chr12	49013978	49065794
KMT2D_chr12_49013978_49065794	0/0	c0081	16614	1	1	0	0	0	0	copy fasta	KMT2D	chr12	49013978	49065794
KMT2E_chr7_105009205_105120019	1/1	c0001	5577	161	38	45	49	5	22	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	c0002	5577	118	38	18	57	1	4	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	c0003	5577	5	0	2	1	0	2	copy fasta	KMT2E	chr7	105009205	105120019