JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KMT2E_chr7_105009205_105120019	0/0	c0004	5577	4	0	4	0	0	0	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	c0005	5577	3	3	0	0	0	0	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	c0006	5577	2	2	0	0	0	0	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	c0007	5577	1	1	0	0	0	0	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	c0008	5577	1	1	0	0	0	0	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	c0009	5577	1	0	1	0	0	0	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	c0010	5577	1	0	1	0	0	0	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	c0011	5577	1	0	0	1	0	0	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	c0012	5577	1	1	0	0	0	0	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	c0013	5577	1	0	0	1	0	0	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	c0014	5577	1	0	0	1	0	0	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	c0015	5577	1	0	0	1	0	0	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	c0016	5577	1	0	1	0	0	0	copy fasta	KMT2E	chr7	105009205	105120019
KMT2E_chr7_105009205_105120019	0/0	c0017	5577	1	0	0	1	0	0	copy fasta	KMT2E	chr7	105009205	105120019
KMT5A_chr12_123379132_123414353	1/1	c0001	1059	330	84	70	124	14	36	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	c0002	1059	1	1	0	0	0	0	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	c0003	1059	1	0	0	1	0	0	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	c0004	1059	1	0	0	1	0	0	copy fasta	KMT5A	chr12	123379132	123414353
KMT5A_chr12_123379132_123414353	0/0	c0005	1059	1	1	0	0	0	0	copy fasta	KMT5A	chr12	123379132	123414353
KMT5B_chr11_68149863_68218296	1/1	c0001	2658	284	56	50	128	14	34	copy fasta	KMT5B	chr11	68149863	68218296
KMT5B_chr11_68149863_68218296	0/0	c0002	2659	14	7	2	4	0	1	copy fasta	KMT5B	chr11	68149863	68218296
KMT5B_chr11_68149863_68218296	0/0	c0003	2658	13	13	0	0	0	0	copy fasta	KMT5B	chr11	68149863	68218296
KMT5B_chr11_68149863_68218296	0/0	c0004	2658	6	6	0	0	0	0	copy fasta	KMT5B	chr11	68149863	68218296
KMT5B_chr11_68149863_68218296	0/0	c0005	2655	2	2	0	0	0	0	copy fasta	KMT5B	chr11	68149863	68218296
KMT5B_chr11_68149863_68218296	0/0	c0006	2658	2	0	0	2	0	0	copy fasta	KMT5B	chr11	68149863	68218296
KMT5B_chr11_68149863_68218296	0/0	c0007	2658	1	1	0	0	0	0	copy fasta	KMT5B	chr11	68149863	68218296
KMT5B_chr11_68149863_68218296	0/0	c0008	2658	1	0	0	1	0	0	copy fasta	KMT5B	chr11	68149863	68218296
KMT5B_chr11_68149863_68218296	0/0	c0009	2658	1	0	0	0	0	1	copy fasta	KMT5B	chr11	68149863	68218296
KMT5B_chr11_68149863_68218296	0/0	c0010	2656	1	1	0	0	0	0	copy fasta	KMT5B	chr11	68149863	68218296
KMT5B_chr11_68149863_68218296	0/0	c0011	2658	1	1	0	0	0	0	copy fasta	KMT5B	chr11	68149863	68218296
KMT5B_chr11_68149863_68218296	0/0	c0012	2658	1	0	0	1	0	0	copy fasta	KMT5B	chr11	68149863	68218296
KMT5B_chr11_68149863_68218296	0/0	c0013	2658	1	1	0	0	0	0	copy fasta	KMT5B	chr11	68149863	68218296
KMT5C_chr19_55334876_55353121	1/1	c0001	1389	364	74	66	163	16	43	copy fasta	KMT5C	chr19	55334876	55353121
KMT5C_chr19_55334876_55353121	0/0	c0002	1389	9	5	1	2	0	1	copy fasta	KMT5C	chr19	55334876	55353121
KMT5C_chr19_55334876_55353121	0/0	c0003	1389	5	0	0	5	0	0	copy fasta	KMT5C	chr19	55334876	55353121
KMT5C_chr19_55334876_55353121	0/0	c0004	1389	5	3	2	0	0	0	copy fasta	KMT5C	chr19	55334876	55353121
KMT5C_chr19_55334876_55353121	0/0	c0005	1389	5	4	1	0	0	0	copy fasta	KMT5C	chr19	55334876	55353121
KMT5C_chr19_55334876_55353121	0/0	c0006	1389	3	3	0	0	0	0	copy fasta	KMT5C	chr19	55334876	55353121
KMT5C_chr19_55334876_55353121	0/0	c0007	1389	3	0	0	3	0	0	copy fasta	KMT5C	chr19	55334876	55353121
KMT5C_chr19_55334876_55353121	0/0	c0008	1389	2	1	1	0	0	0	copy fasta	KMT5C	chr19	55334876	55353121
KMT5C_chr19_55334876_55353121	0/0	c0009	1389	2	1	1	0	0	0	copy fasta	KMT5C	chr19	55334876	55353121
KMT5C_chr19_55334876_55353121	0/0	c0010	1389	1	0	1	0	0	0	copy fasta	KMT5C	chr19	55334876	55353121
KMT5C_chr19_55334876_55353121	0/0	c0011	1389	1	0	1	0	0	0	copy fasta	KMT5C	chr19	55334876	55353121
KMT5C_chr19_55334876_55353121	0/0	c0012	1389	1	0	0	1	0	0	copy fasta	KMT5C	chr19	55334876	55353121
KMT5C_chr19_55334876_55353121	0/0	c0013	1389	1	1	0	0	0	0	copy fasta	KMT5C	chr19	55334876	55353121
KMT5C_chr19_55334876_55353121	0/0	c0014	1389	1	1	0	0	0	0	copy fasta	KMT5C	chr19	55334876	55353121
KMT5C_chr19_55334876_55353121	0/0	c0015	1389	1	1	0	0	0	0	copy fasta	KMT5C	chr19	55334876	55353121
KMT5C_chr19_55334876_55353121	0/0	c0016	1389	1	0	0	1	0	0	copy fasta	KMT5C	chr19	55334876	55353121
KMT5C_chr19_55334876_55353121	0/0	c0017	1389	1	0	0	1	0	0	copy fasta	KMT5C	chr19	55334876	55353121
KNCN_chr1_46540641_46556647	1/1	c0001	375	390	93	62	171	15	47	copy fasta	KNCN	chr1	46540641	46556647