JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KNCN_chr1_46540641_46556647	0/0	c0002	375	11	0	2	6	0	3	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/0	c0003	375	5	5	0	0	0	0	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/0	c0004	375	4	0	3	0	1	0	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/0	c0005	375	2	2	0	0	0	0	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/0	c0006	375	1	0	1	0	0	0	copy fasta	KNCN	chr1	46540641	46556647
KNCN_chr1_46540641_46556647	0/0	c0007	375	1	0	0	1	0	0	copy fasta	KNCN	chr1	46540641	46556647
KNDC1_chr10_133155219_133231412	1/0	c0001	5250	75	15	14	39	3	3	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/1	c0002	5250	60	8	9	33	3	6	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0003	5250	21	3	10	3	2	3	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0004	5250	17	5	7	3	1	1	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0005	5250	16	1	3	9	2	1	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0006	5250	13	1	8	2	0	2	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0007	5250	9	0	0	9	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0008	5250	7	5	0	1	0	1	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0009	5250	7	6	1	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0010	5250	7	7	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0011	5250	7	7	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0012	5250	7	0	1	3	3	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0013	5250	7	7	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0014	5250	4	0	0	0	0	4	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0015	5250	4	3	1	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0016	5250	3	2	1	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0017	5250	3	0	0	2	0	1	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0018	5250	2	2	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0019	5250	2	2	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0020	5250	2	2	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0021	5250	2	0	0	1	0	1	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0022	5250	2	0	0	0	1	1	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0023	5250	2	0	0	0	2	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0024	5250	2	0	0	2	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0025	5250	2	2	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0026	5250	2	2	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0027	5250	2	0	0	2	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0028	5250	2	0	2	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0029	5250	2	1	1	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0030	5250	1	1	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0031	5250	1	1	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0032	5250	1	0	1	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0033	5250	1	1	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0034	5250	1	0	1	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0035	5250	1	0	1	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0036	5250	1	0	0	0	0	1	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0037	5250	1	1	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0038	5250	1	1	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0039	5250	1	0	0	1	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0040	5250	1	1	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0041	5250	1	0	0	0	0	1	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0042	5250	1	0	1	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0043	5250	1	0	0	1	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0044	5250	1	1	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412