JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KNDC1_chr10_133155219_133231412	0/0	c0045	5250	1	1	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0046	5250	1	0	0	1	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0047	5250	1	0	1	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0048	5250	1	0	1	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0049	5250	1	0	1	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0050	5250	1	0	0	0	1	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0051	5250	1	1	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0052	5250	1	1	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0053	5250	1	1	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0054	5250	1	0	0	1	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0055	5250	1	1	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0056	5250	1	0	1	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0057	5250	1	0	0	0	0	1	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0058	5250	1	0	0	1	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0059	5250	1	1	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0060	5250	1	0	0	0	0	1	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0061	5250	1	0	1	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0062	5250	1	0	0	1	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0063	5250	1	0	0	1	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0064	5250	1	1	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0065	5250	1	0	1	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0066	5250	1	1	0	0	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0067	5250	1	0	0	0	0	1	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0068	5250	1	0	0	1	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0069	5250	1	0	0	1	0	0	copy fasta	KNDC1	chr10	133155219	133231412
KNDC1_chr10_133155219_133231412	0/0	c0070	5250	1	0	0	0	0	1	copy fasta	KNDC1	chr10	133155219	133231412
KNG1_chr3_186712359_186749410	1/0	c0001	1935	115	18	21	68	2	5	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/1	c0002	1935	74	8	23	31	3	8	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	c0003	1935	46	1	5	31	1	8	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	c0004	1935	35	5	2	25	1	2	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	c0005	1935	27	1	4	16	1	5	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	c0006	1935	22	4	3	7	2	6	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	c0007	1935	17	17	0	0	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	c0008	1935	14	2	2	6	2	2	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	c0009	1935	12	7	2	1	0	2	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	c0010	1935	12	10	0	2	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	c0011	1935	11	9	1	0	0	1	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	c0012	1935	9	1	6	0	1	1	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	c0013	1935	5	4	0	0	0	1	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	c0014	1935	5	3	0	1	1	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	c0015	1935	4	1	3	0	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	c0016	1935	3	2	1	0	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	c0017	1935	3	0	0	1	0	2	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	c0018	1935	2	0	0	2	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	c0019	1935	2	2	0	0	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	c0020	1935	1	0	0	1	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	c0021	1935	1	0	0	1	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	c0022	1935	1	0	1	0	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	c0023	1935	1	0	0	1	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	c0024	1935	1	0	1	0	0	0	copy fasta	KNG1	chr3	186712359	186749410