JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KNG1_chr3_186712359_186749410	0/0	c0025	1935	1	0	0	0	0	1	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	c0026	1935	1	0	0	1	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	c0027	1935	1	1	0	0	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	c0028	1935	1	0	0	1	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	c0029	1935	1	0	1	0	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	c0030	1935	1	0	0	1	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNG1_chr3_186712359_186749410	0/0	c0031	1935	1	0	0	1	0	0	copy fasta	KNG1	chr3	186712359	186749410
KNL1_chr15_40589249_40669342	1/0	c0001	6951	102	4	19	59	6	13	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/1	c0002	6951	95	6	18	51	2	17	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	c0003	6951	48	2	15	18	3	10	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	c0004	6951	23	22	1	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	c0005	6951	16	15	1	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	c0006	6951	15	0	1	14	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	c0007	6951	9	9	0	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	c0008	6951	7	0	6	0	1	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	c0009	6951	4	3	1	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	c0010	6951	4	0	0	4	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	c0011	6951	4	4	0	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	c0012	6951	3	3	0	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	c0013	6951	3	0	0	3	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	c0014	6951	3	0	0	3	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	c0015	6951	3	3	0	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	c0016	6951	2	0	0	2	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	c0017	6951	2	0	1	0	0	1	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	c0018	6951	2	2	0	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	c0019	6951	2	0	0	2	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	c0020	6951	1	1	0	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	c0021	6951	1	1	0	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	c0022	6951	1	1	0	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	c0023	6951	1	1	0	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	c0024	6951	1	0	0	1	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	c0025	6951	1	1	0	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	c0026	6951	1	0	0	1	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	c0027	6951	1	0	0	1	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	c0028	6951	1	0	0	0	0	1	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	c0029	6951	1	1	0	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	c0030	6951	1	0	1	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	c0031	6951	1	0	0	1	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	c0032	6951	1	0	0	1	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	c0033	6951	1	1	0	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	c0034	6951	1	0	1	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	c0035	6951	1	0	0	1	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	c0036	6951	1	0	0	1	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	c0037	6951	1	0	1	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	c0038	6951	1	0	0	1	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	c0039	6951	1	0	0	1	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	c0040	6951	1	1	0	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	c0041	6951	1	0	0	1	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNL1_chr15_40589249_40669342	0/0	c0042	6951	1	1	0	0	0	0	copy fasta	KNL1	chr15	40589249	40669342
KNOP1_chr16_19696937_19723227	1/1	c0001	1377	298	52	68	134	13	29	copy fasta	KNOP1	chr16	19696937	19723227