JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KNOP1_chr16_19696937_19723227	0/0	c0002	1377	26	24	2	0	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	c0003	1377	17	2	5	0	3	7	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	c0004	1377	7	0	1	6	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	c0005	1377	5	5	0	0	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	c0006	1377	4	4	0	0	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	c0007	1377	4	0	0	0	0	4	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	c0008	1377	2	0	0	0	0	2	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	c0009	1377	2	0	0	2	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	c0010	1377	2	2	0	0	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	c0011	1377	2	2	0	0	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	c0012	1377	1	1	0	0	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	c0013	1377	1	1	0	0	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNOP1_chr16_19696937_19723227	0/0	c0014	1377	1	1	0	0	0	0	copy fasta	KNOP1	chr16	19696937	19723227
KNSTRN_chr15_40377721_40399288	1/1	c0001	951	353	81	60	157	12	41	copy fasta	KNSTRN	chr15	40377721	40399288
KNSTRN_chr15_40377721_40399288	0/0	c0002	951	8	0	5	2	0	1	copy fasta	KNSTRN	chr15	40377721	40399288
KNSTRN_chr15_40377721_40399288	0/0	c0003	951	6	1	3	0	2	0	copy fasta	KNSTRN	chr15	40377721	40399288
KNSTRN_chr15_40377721_40399288	0/0	c0004	951	3	3	0	0	0	0	copy fasta	KNSTRN	chr15	40377721	40399288
KNSTRN_chr15_40377721_40399288	0/0	c0005	951	2	0	0	2	0	0	copy fasta	KNSTRN	chr15	40377721	40399288
KNSTRN_chr15_40377721_40399288	0/0	c0006	951	1	0	0	1	0	0	copy fasta	KNSTRN	chr15	40377721	40399288
KNSTRN_chr15_40377721_40399288	0/0	c0007	951	1	1	0	0	0	0	copy fasta	KNSTRN	chr15	40377721	40399288
KNTC1_chr12_122522249_122631396	1/0	c0001	6630	148	25	39	59	7	17	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/1	c0002	6630	81	5	16	43	4	12	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	c0003	6630	13	12	1	0	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	c0004	6630	12	0	4	0	3	5	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	c0005	6630	9	9	0	0	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	c0006	6630	5	5	0	0	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	c0007	6630	5	0	0	5	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	c0008	6630	4	0	2	0	0	2	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	c0009	6630	4	3	1	0	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	c0010	6630	3	3	0	0	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	c0011	6630	3	0	0	3	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	c0012	6630	3	3	0	0	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	c0013	6630	3	3	0	0	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	c0014	6630	2	0	0	0	0	2	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	c0015	6630	2	2	0	0	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	c0016	6630	1	0	0	0	0	1	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	c0017	6630	1	0	0	1	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	c0018	6630	1	0	0	1	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	c0019	6630	1	0	0	1	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	c0020	6630	1	1	0	0	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	c0021	6630	1	0	0	1	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	c0022	6630	1	0	0	1	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	c0023	6630	1	0	0	1	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	c0024	6630	1	1	0	0	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	c0025	6630	1	0	0	1	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	c0026	6630	1	0	0	0	0	1	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	c0027	6630	1	0	0	1	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	c0028	6630	1	0	0	1	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	c0029	6630	1	1	0	0	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	c0030	6630	1	1	0	0	0	0	copy fasta	KNTC1	chr12	122522249	122631396