JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KNTC1_chr12_122522249_122631396	0/0	c0031	6630	1	1	0	0	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	c0032	6630	1	0	1	0	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	c0033	6630	1	1	0	0	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	c0034	6630	1	0	1	0	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	c0035	6630	1	1	0	0	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	c0036	6630	1	0	1	0	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	c0037	6630	1	1	0	0	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KNTC1_chr12_122522249_122631396	0/0	c0038	6630	1	0	0	1	0	0	copy fasta	KNTC1	chr12	122522249	122631396
KPLCE_chr1_152714522_152725470	1/1	c0001	753	217	28	41	110	7	29	copy fasta	KPLCE	chr1	152714522	152725470
KPLCE_chr1_152714522_152725470	0/0	c0002	753	117	42	26	36	5	8	copy fasta	KPLCE	chr1	152714522	152725470
KPLCE_chr1_152714522_152725470	0/0	c0003	753	36	10	7	14	0	5	copy fasta	KPLCE	chr1	152714522	152725470
KPLCE_chr1_152714522_152725470	0/0	c0004	753	9	9	0	0	0	0	copy fasta	KPLCE	chr1	152714522	152725470
KPLCE_chr1_152714522_152725470	0/0	c0005	753	2	2	0	0	0	0	copy fasta	KPLCE	chr1	152714522	152725470
KPLCE_chr1_152714522_152725470	0/0	c0006	753	2	2	0	0	0	0	copy fasta	KPLCE	chr1	152714522	152725470
KPLCE_chr1_152714522_152725470	0/0	c0007	753	1	1	0	0	0	0	copy fasta	KPLCE	chr1	152714522	152725470
KPNA1_chr3_122416902_122519939	0/1	c0001	1617	393	92	66	180	13	41	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	c0002	1617	2	0	0	2	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	c0003	1617	2	0	0	0	1	1	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	1/0	c0004	1617	2	1	0	0	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA1_chr3_122416902_122519939	0/0	c0005	1617	1	1	0	0	0	0	copy fasta	KPNA1	chr3	122416902	122519939
KPNA2_chr17_68030735_68051854	0/1	c0001	1590	171	51	34	53	11	21	copy fasta	KPNA2	chr17	68030735	68051854
KPNA2_chr17_68030735_68051854	1/0	c0002	1590	130	27	16	70	1	15	copy fasta	KPNA2	chr17	68030735	68051854
KPNA2_chr17_68030735_68051854	0/0	c0003	1590	14	10	4	0	0	0	copy fasta	KPNA2	chr17	68030735	68051854
KPNA2_chr17_68030735_68051854	0/0	c0004	1590	3	2	1	0	0	0	copy fasta	KPNA2	chr17	68030735	68051854
KPNA2_chr17_68030735_68051854	0/0	c0005	1590	3	0	1	0	1	1	copy fasta	KPNA2	chr17	68030735	68051854
KPNA2_chr17_68030735_68051854	0/0	c0006	1590	3	0	0	3	0	0	copy fasta	KPNA2	chr17	68030735	68051854
KPNA2_chr17_68030735_68051854	0/0	c0007	1590	2	0	0	2	0	0	copy fasta	KPNA2	chr17	68030735	68051854
KPNA2_chr17_68030735_68051854	0/0	c0008	1590	2	2	0	0	0	0	copy fasta	KPNA2	chr17	68030735	68051854
KPNA2_chr17_68030735_68051854	0/0	c0009	1590	2	2	0	0	0	0	copy fasta	KPNA2	chr17	68030735	68051854
KPNA2_chr17_68030735_68051854	0/0	c0010	1590	1	0	0	1	0	0	copy fasta	KPNA2	chr17	68030735	68051854
KPNA2_chr17_68030735_68051854	0/0	c0011	1590	1	0	0	0	0	1	copy fasta	KPNA2	chr17	68030735	68051854
KPNA2_chr17_68030735_68051854	0/0	c0012	1590	1	0	0	1	0	0	copy fasta	KPNA2	chr17	68030735	68051854
KPNA2_chr17_68030735_68051854	0/0	c0013	1590	1	1	0	0	0	0	copy fasta	KPNA2	chr17	68030735	68051854
KPNA2_chr17_68030735_68051854	0/0	c0014	1590	1	0	0	1	0	0	copy fasta	KPNA2	chr17	68030735	68051854
KPNA2_chr17_68030735_68051854	0/0	c0015	1590	1	0	0	1	0	0	copy fasta	KPNA2	chr17	68030735	68051854
KPNA2_chr17_68030735_68051854	0/0	c0016	1590	1	0	0	1	0	0	copy fasta	KPNA2	chr17	68030735	68051854
KPNA2_chr17_68030735_68051854	0/0	c0017	1590	1	1	0	0	0	0	copy fasta	KPNA2	chr17	68030735	68051854
KPNA2_chr17_68030735_68051854	0/0	c0018	1590	1	0	0	1	0	0	copy fasta	KPNA2	chr17	68030735	68051854
KPNA2_chr17_68030735_68051854	0/0	c0019	1590	1	0	0	0	1	0	copy fasta	KPNA2	chr17	68030735	68051854
KPNA3_chr13_49694320_49797682	0/1	c0001	1566	243	65	49	85	9	34	copy fasta	KPNA3	chr13	49694320	49797682
KPNA3_chr13_49694320_49797682	0/0	c0002	1566	85	5	12	63	0	5	copy fasta	KPNA3	chr13	49694320	49797682
KPNA3_chr13_49694320_49797682	1/0	c0003	1566	33	15	11	0	1	5	copy fasta	KPNA3	chr13	49694320	49797682
KPNA3_chr13_49694320_49797682	0/0	c0004	1566	11	10	1	0	0	0	copy fasta	KPNA3	chr13	49694320	49797682
KPNA3_chr13_49694320_49797682	0/0	c0005	1566	1	0	0	1	0	0	copy fasta	KPNA3	chr13	49694320	49797682
KPNA3_chr13_49694320_49797682	0/0	c0006	1566	1	0	0	1	0	0	copy fasta	KPNA3	chr13	49694320	49797682
KPNA3_chr13_49694320_49797682	0/0	c0007	1566	1	1	0	0	0	0	copy fasta	KPNA3	chr13	49694320	49797682
KPNA3_chr13_49694320_49797682	0/0	c0008	1566	1	0	1	0	0	0	copy fasta	KPNA3	chr13	49694320	49797682
KPNA4_chr3_160490007_160570571	1/1	c0001	1566	275	73	59	102	11	28	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	c0002	1566	17	16	1	0	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	c0003	1566	9	3	0	2	1	3	copy fasta	KPNA4	chr3	160490007	160570571