JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KPNA4_chr3_160490007_160570571	0/0	c0004	1566	6	0	0	6	0	0	copy fasta	KPNA4	chr3	160490007	160570571
KPNA4_chr3_160490007_160570571	0/0	c0005	1566	1	0	0	0	0	1	copy fasta	KPNA4	chr3	160490007	160570571
KPNA5_chr6_116676211_116746867	1/1	c0001	1620	330	84	45	143	16	40	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	c0002	1620	7	5	2	0	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	c0003	1620	4	0	2	0	0	2	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	c0004	1620	1	0	1	0	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	c0005	1620	1	0	0	1	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA5_chr6_116676211_116746867	0/0	c0006	1620	1	1	0	0	0	0	copy fasta	KPNA5	chr6	116676211	116746867
KPNA6_chr1_32103056_32181563	1/1	c0001	1611	240	63	48	92	10	25	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	c0002	1611	1	0	0	0	0	1	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	c0003	1611	1	1	0	0	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	c0004	1611	1	0	0	1	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA6_chr1_32103056_32181563	0/0	c0005	1611	1	0	0	1	0	0	copy fasta	KPNA6	chr1	32103056	32181563
KPNA7_chr7_99168572_99213115	1/1	c0001	1551	117	65	16	15	4	15	copy fasta	KPNA7	chr7	99168572	99213115
KPNA7_chr7_99168572_99213115	0/0	c0002	1551	104	5	25	57	7	10	copy fasta	KPNA7	chr7	99168572	99213115
KPNA7_chr7_99168572_99213115	0/0	c0003	1551	41	1	9	25	2	4	copy fasta	KPNA7	chr7	99168572	99213115
KPNA7_chr7_99168572_99213115	0/0	c0004	1551	34	3	4	20	1	6	copy fasta	KPNA7	chr7	99168572	99213115
KPNA7_chr7_99168572_99213115	0/0	c0005	1551	10	3	3	4	0	0	copy fasta	KPNA7	chr7	99168572	99213115
KPNA7_chr7_99168572_99213115	0/0	c0006	1551	5	0	1	2	0	2	copy fasta	KPNA7	chr7	99168572	99213115
KPNA7_chr7_99168572_99213115	0/0	c0007	1551	4	4	0	0	0	0	copy fasta	KPNA7	chr7	99168572	99213115
KPNA7_chr7_99168572_99213115	0/0	c0008	1551	4	4	0	0	0	0	copy fasta	KPNA7	chr7	99168572	99213115
KPNA7_chr7_99168572_99213115	0/0	c0009	1551	2	2	0	0	0	0	copy fasta	KPNA7	chr7	99168572	99213115
KPNA7_chr7_99168572_99213115	0/0	c0010	1551	2	1	1	0	0	0	copy fasta	KPNA7	chr7	99168572	99213115
KPNA7_chr7_99168572_99213115	0/0	c0011	1551	2	0	0	2	0	0	copy fasta	KPNA7	chr7	99168572	99213115
KPNA7_chr7_99168572_99213115	0/0	c0012	1551	1	1	0	0	0	0	copy fasta	KPNA7	chr7	99168572	99213115
KPNA7_chr7_99168572_99213115	0/0	c0013	1551	1	0	0	0	0	1	copy fasta	KPNA7	chr7	99168572	99213115
KPNA7_chr7_99168572_99213115	0/0	c0014	1551	1	0	0	1	0	0	copy fasta	KPNA7	chr7	99168572	99213115
KPNA7_chr7_99168572_99213115	0/0	c0015	1551	1	0	1	0	0	0	copy fasta	KPNA7	chr7	99168572	99213115
KPNA7_chr7_99168572_99213115	0/0	c0016	1551	1	0	0	1	0	0	copy fasta	KPNA7	chr7	99168572	99213115
KPNA7_chr7_99168572_99213115	0/0	c0017	1551	1	0	0	0	0	1	copy fasta	KPNA7	chr7	99168572	99213115
KPNA7_chr7_99168572_99213115	0/0	c0018	1551	1	1	0	0	0	0	copy fasta	KPNA7	chr7	99168572	99213115
KPNA7_chr7_99168572_99213115	0/0	c0019	1199	1	0	0	1	0	0	copy fasta	KPNA7	chr7	99168572	99213115
KPNA7_chr7_99168572_99213115	0/0	c0020	1551	1	0	0	0	0	1	copy fasta	KPNA7	chr7	99168572	99213115
KPNB1_chr17_47644919_47690505	0/0	c0001	4363	77	17	10	36	3	11	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/1	c0002	4363	40	12	8	8	4	7	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0003	4363	34	0	9	25	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0004	4364	31	5	7	17	0	2	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0005	4364	31	5	7	12	2	5	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0006	4364	16	1	1	13	1	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0007	4364	14	6	2	4	0	2	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0008	4363	13	1	6	0	3	3	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0009	4365	10	0	1	7	0	2	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0010	4364	9	1	1	5	0	2	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0011	4363	9	0	6	0	2	1	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0012	4365	8	6	0	1	1	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0013	4365	8	0	0	8	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0014	4363	6	0	1	5	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0015	4363	3	1	2	0	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0016	4364	3	2	1	0	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0017	4367	3	0	0	3	0	0	copy fasta	KPNB1	chr17	47644919	47690505