JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
KPNB1_chr17_47644919_47690505	1/0	c0018	4365	3	0	1	1	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0019	4366	3	1	0	2	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0020	4362	3	1	0	2	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0021	4365	3	1	1	0	1	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0022	4364	3	0	0	3	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0023	4366	2	1	1	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0024	4365	2	0	0	0	2	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0025	4363	2	0	0	2	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0026	4366	2	0	0	2	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0027	4364	2	2	0	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0028	4365	2	2	0	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0029	4354	2	2	0	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0030	4363	1	0	0	1	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0031	4361	1	1	0	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0032	4362	1	1	0	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0033	4364	1	0	0	1	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0034	4363	1	1	0	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0035	4365	1	1	0	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0036	4362	1	0	0	1	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0037	4364	1	0	0	0	1	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0038	4366	1	1	0	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0039	4367	1	1	0	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0040	4368	1	1	0	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0041	4367	1	1	0	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0042	4363	1	0	0	1	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0043	4362	1	0	0	1	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0044	4362	1	1	0	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0045	4362	1	0	0	1	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0046	4364	1	0	0	0	1	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0047	4364	1	1	0	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0048	4365	1	0	0	1	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0049	4365	1	1	0	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0050	4367	1	0	0	1	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0051	4364	1	0	0	1	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0052	4361	1	1	0	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0053	4363	1	0	0	1	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0054	4366	1	0	0	1	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0055	4366	1	0	0	1	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0056	4363	1	1	0	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0057	4361	1	0	0	1	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0058	4362	1	1	0	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0059	4363	1	0	0	1	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0060	4363	1	1	0	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0061	4364	1	0	1	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0062	4364	1	1	0	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0063	4364	1	0	0	1	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0064	4364	1	0	0	1	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0065	4364	1	0	0	0	1	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0066	4363	1	0	0	1	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0067	4364	1	0	0	1	0	copy fasta	KPNB1	chr17	47644919	47690505