JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KPNB1_chr17_47644919_47690505	0/0	c0068	4363	1	1	0	0	0	0	copy fasta	KPNB1	chr17	47644919	47690505
KPNB1_chr17_47644919_47690505	0/0	c0069	4363	1	0	0	0	0	1	copy fasta	KPNB1	chr17	47644919	47690505
KPRP_chr1_152753025_152767056	1/0	c0001	1740	152	20	32	81	4	14	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/0	c0002	1740	99	15	17	54	1	12	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/1	c0003	1740	62	13	16	21	5	6	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/0	c0004	1740	50	1	9	25	2	13	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/0	c0005	1740	8	0	3	5	0	0	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/0	c0006	1740	8	8	0	0	0	0	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/0	c0007	1740	8	8	0	0	0	0	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/0	c0008	1741	6	6	0	0	0	0	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/0	c0009	1740	5	5	0	0	0	0	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/0	c0010	1740	5	5	0	0	0	0	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/0	c0011	1740	4	4	0	0	0	0	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/0	c0012	1740	4	0	0	4	0	0	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/0	c0013	1740	3	3	0	0	0	0	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/0	c0014	1740	2	2	0	0	0	0	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/0	c0015	1740	2	2	0	0	0	0	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/0	c0016	1740	2	2	0	0	0	0	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/0	c0017	1740	1	1	0	0	0	0	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/0	c0018	1740	1	1	0	0	0	0	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/0	c0019	1740	1	0	0	0	0	1	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/0	c0020	1740	1	0	0	1	0	0	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/0	c0021	1740	1	0	1	0	0	0	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/0	c0022	1740	1	0	0	1	0	0	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/0	c0023	1740	1	1	0	0	0	0	copy fasta	KPRP	chr1	152753025	152767056
KPRP_chr1_152753025_152767056	0/0	c0024	1740	1	1	0	0	0	0	copy fasta	KPRP	chr1	152753025	152767056
KPTN_chr19_47470150_47489219	0/0	c0001	1311	250	77	53	85	8	27	copy fasta	KPTN	chr19	47470150	47489219
KPTN_chr19_47470150_47489219	0/0	c0002	1311	103	1	16	64	7	15	copy fasta	KPTN	chr19	47470150	47489219
KPTN_chr19_47470150_47489219	0/0	c0003	1311	6	0	3	0	1	2	copy fasta	KPTN	chr19	47470150	47489219
KPTN_chr19_47470150_47489219	0/0	c0004	1311	6	4	2	0	0	0	copy fasta	KPTN	chr19	47470150	47489219
KPTN_chr19_47470150_47489219	0/0	c0005	1311	5	5	0	0	0	0	copy fasta	KPTN	chr19	47470150	47489219
KPTN_chr19_47470150_47489219	0/0	c0006	1311	2	2	0	0	0	0	copy fasta	KPTN	chr19	47470150	47489219
KPTN_chr19_47470150_47489219	0/0	c0007	1311	2	2	0	0	0	0	copy fasta	KPTN	chr19	47470150	47489219
KPTN_chr19_47470150_47489219	0/0	c0008	1311	1	0	0	0	1	0	copy fasta	KPTN	chr19	47470150	47489219
KPTN_chr19_47470150_47489219	0/0	c0009	1311	1	1	0	0	0	0	copy fasta	KPTN	chr19	47470150	47489219
KPTN_chr19_47470150_47489219	0/0	c0010	1311	1	0	0	0	1	0	copy fasta	KPTN	chr19	47470150	47489219
KPTN_chr19_47470150_47489219	0/0	c0011	1311	1	0	0	1	0	0	copy fasta	KPTN	chr19	47470150	47489219
KRAS_chr12_25200246_25255929	1/1	c0001	570	345	94	73	124	12	40	copy fasta	KRAS	chr12	25200246	25255929
KRAS_chr12_25200246_25255929	0/0	c0002	570	1	0	1	0	0	0	copy fasta	KRAS	chr12	25200246	25255929
KRBA1_chr7_149709951_149739575	0/1	c0001	3195	269	32	41	151	11	33	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	c0002	3195	28	8	6	7	1	6	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	c0003	3195	27	2	3	21	1	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	c0004	3195	23	17	3	3	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	c0005	3195	8	8	0	0	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	1/0	c0006	3195	7	1	4	0	1	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	c0007	3195	5	2	3	0	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	c0008	3195	5	5	0	0	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	c0009	3195	4	4	0	0	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	c0010	3195	3	3	0	0	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	c0011	3195	3	3	0	0	0	0	copy fasta	KRBA1	chr7	149709951	149739575