JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KRBA1_chr7_149709951_149739575	0/0	c0012	3195	3	1	2	0	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	c0013	3195	3	3	0	0	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	c0014	3195	2	0	2	0	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	c0015	3195	2	0	0	2	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	c0016	3195	2	2	0	0	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	c0017	3039	1	0	0	1	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	c0018	3195	1	0	0	0	1	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	c0019	3195	1	0	0	1	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	c0020	3195	1	0	1	0	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	c0021	3195	1	0	0	0	1	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	c0022	3195	1	0	0	1	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	c0023	3195	1	0	0	0	0	1	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	c0024	3195	1	0	1	0	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	c0025	3195	1	0	1	0	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	c0026	3195	1	0	0	1	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	c0027	3195	1	0	1	0	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	c0028	3195	1	0	0	0	0	1	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	c0029	3195	1	0	0	1	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	c0030	3195	1	1	0	0	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	c0031	3195	1	0	1	0	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	c0032	3195	1	1	0	0	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	c0033	3195	1	1	0	0	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	c0034	3195	1	0	0	1	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	c0035	3195	1	0	1	0	0	0	copy fasta	KRBA1	chr7	149709951	149739575
KRBA1_chr7_149709951_149739575	0/0	c0036	3195	1	0	0	0	0	1	copy fasta	KRBA1	chr7	149709951	149739575
KRBA2_chr17_8353822_8381704	1/1	c0001	1233	291	67	55	121	9	37	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	c0002	1233	67	11	5	45	5	1	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	c0003	1233	12	10	2	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	c0004	1233	6	6	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	c0005	1233	3	3	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	c0006	1233	2	0	2	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	c0007	1233	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	c0008	1233	1	0	1	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	c0009	1233	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	c0010	1233	1	1	0	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	c0011	1233	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	c0012	1233	1	0	0	1	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBA2_chr17_8353822_8381704	0/0	c0013	1233	1	0	1	0	0	0	copy fasta	KRBA2	chr17	8353822	8381704
KRBOX1_chr3_42931386_42947792	1/1	c0001	387	400	86	73	179	14	46	copy fasta	KRBOX1	chr3	42931386	42947792
KRBOX1_chr3_42931386_42947792	0/0	c0002	387	19	4	1	14	0	0	copy fasta	KRBOX1	chr3	42931386	42947792
KRBOX1_chr3_42931386_42947792	0/0	c0003	387	5	0	0	5	0	0	copy fasta	KRBOX1	chr3	42931386	42947792
KRBOX1_chr3_42931386_42947792	0/0	c0004	387	1	0	0	1	0	0	copy fasta	KRBOX1	chr3	42931386	42947792
KRBOX1_chr3_42931386_42947792	0/0	c0005	387	1	0	0	1	0	0	copy fasta	KRBOX1	chr3	42931386	42947792
KRBOX4_chrX_46442297_46479639	1/1	c0001	516	311	70	52	146	13	28	copy fasta	KRBOX4	chrX	46442297	46479639
KRBOX4_chrX_46442297_46479639	0/0	c0002	516	5	0	2	3	0	0	copy fasta	KRBOX4	chrX	46442297	46479639
KRBOX4_chrX_46442297_46479639	0/0	c0003	515	1	0	0	1	0	0	copy fasta	KRBOX4	chrX	46442297	46479639
KRBOX4_chrX_46442297_46479639	0/0	c0004	516	1	0	1	0	0	0	copy fasta	KRBOX4	chrX	46442297	46479639
KRBOX5_chr16_31708244_31766565	1/0	c0001	381	146	28	19	84	3	11	copy fasta	KRBOX5	chr16	31708244	31766565
KRBOX5_chr16_31708244_31766565	0/1	c0002	382	143	40	27	54	5	16	copy fasta	KRBOX5	chr16	31708244	31766565
KRBOX5_chr16_31708244_31766565	0/0	c0003	381	83	18	6	44	2	13	copy fasta	KRBOX5	chr16	31708244	31766565