JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
KRBOX5_chr16_31708244_31766565	0/0	c0004	381	1	0	0	1	0	0	copy fasta	KRBOX5	chr16	31708244	31766565
KRBOX5_chr16_31708244_31766565	0/0	c0005	381	1	0	0	1	0	0	copy fasta	KRBOX5	chr16	31708244	31766565
KRCC1_chr2_88022205_88060783	1/1	c0001	780	331	77	73	136	10	33	copy fasta	KRCC1	chr2	88022205	88060783
KRCC1_chr2_88022205_88060783	0/0	c0002	780	2	2	0	0	0	0	copy fasta	KRCC1	chr2	88022205	88060783
KRCC1_chr2_88022205_88060783	0/0	c0003	780	2	2	0	0	0	0	copy fasta	KRCC1	chr2	88022205	88060783
KRCC1_chr2_88022205_88060783	0/0	c0004	780	2	0	1	0	0	1	copy fasta	KRCC1	chr2	88022205	88060783
KRCC1_chr2_88022205_88060783	0/0	c0005	780	1	0	0	1	0	0	copy fasta	KRCC1	chr2	88022205	88060783
KRCC1_chr2_88022205_88060783	0/0	c0006	780	1	0	0	1	0	0	copy fasta	KRCC1	chr2	88022205	88060783
KRCC1_chr2_88022205_88060783	0/0	c0007	780	1	1	0	0	0	0	copy fasta	KRCC1	chr2	88022205	88060783
KREMEN1_chr22_29068035_29151820	0/1	c0001	1377	175	51	22	82	7	12	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	1/0	c0002	1377	96	10	26	47	2	10	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	c0003	1377	39	0	0	30	0	9	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	c0004	1377	16	3	4	3	0	6	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	c0005	1377	15	15	0	0	0	0	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	c0006	1377	5	0	2	0	1	2	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	c0007	1377	3	3	0	0	0	0	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	c0008	1377	3	0	0	3	0	0	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	c0009	1377	3	3	0	0	0	0	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	c0010	1377	2	1	1	0	0	0	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	c0011	1377	2	0	0	2	0	0	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	c0012	1377	2	2	0	0	0	0	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	c0013	1377	1	0	0	1	0	0	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	c0014	1377	1	0	1	0	0	0	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	c0015	1377	1	1	0	0	0	0	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	c0016	1377	1	0	0	1	0	0	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	c0017	1377	1	0	0	1	0	0	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	c0018	1377	1	0	0	0	0	1	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN1_chr22_29068035_29151820	0/0	c0019	1377	1	1	0	0	0	0	copy fasta	KREMEN1	chr22	29068035	29151820
KREMEN2_chr16_2959275_2973380	1/1	c0001	1389	204	40	41	79	14	28	copy fasta	KREMEN2	chr16	2959275	2973380
KREMEN2_chr16_2959275_2973380	0/0	c0002	1389	114	6	22	71	3	12	copy fasta	KREMEN2	chr16	2959275	2973380
KREMEN2_chr16_2959275_2973380	0/0	c0003	1389	35	32	3	0	0	0	copy fasta	KREMEN2	chr16	2959275	2973380
KREMEN2_chr16_2959275_2973380	0/0	c0004	1389	27	0	1	26	0	0	copy fasta	KREMEN2	chr16	2959275	2973380
KREMEN2_chr16_2959275_2973380	0/0	c0005	1389	23	0	4	18	1	0	copy fasta	KREMEN2	chr16	2959275	2973380
KREMEN2_chr16_2959275_2973380	0/0	c0006	1389	6	5	1	0	0	0	copy fasta	KREMEN2	chr16	2959275	2973380
KREMEN2_chr16_2959275_2973380	0/0	c0007	1389	4	4	0	0	0	0	copy fasta	KREMEN2	chr16	2959275	2973380
KREMEN2_chr16_2959275_2973380	0/0	c0008	1389	3	0	0	3	0	0	copy fasta	KREMEN2	chr16	2959275	2973380
KREMEN2_chr16_2959275_2973380	0/0	c0009	1389	3	0	0	3	0	0	copy fasta	KREMEN2	chr16	2959275	2973380
KREMEN2_chr16_2959275_2973380	0/0	c0010	1389	3	3	0	0	0	0	copy fasta	KREMEN2	chr16	2959275	2973380
KREMEN2_chr16_2959275_2973380	0/0	c0011	1389	2	0	0	2	0	0	copy fasta	KREMEN2	chr16	2959275	2973380
KREMEN2_chr16_2959275_2973380	0/0	c0012	1389	2	0	2	0	0	0	copy fasta	KREMEN2	chr16	2959275	2973380
KREMEN2_chr16_2959275_2973380	0/0	c0013	1389	2	2	0	0	0	0	copy fasta	KREMEN2	chr16	2959275	2973380
KREMEN2_chr16_2959275_2973380	0/0	c0014	1389	2	2	0	0	0	0	copy fasta	KREMEN2	chr16	2959275	2973380
KREMEN2_chr16_2959275_2973380	0/0	c0015	1389	1	0	0	1	0	0	copy fasta	KREMEN2	chr16	2959275	2973380
KREMEN2_chr16_2959275_2973380	0/0	c0016	1389	1	1	0	0	0	0	copy fasta	KREMEN2	chr16	2959275	2973380
KREMEN2_chr16_2959275_2973380	0/0	c0017	1389	1	0	0	1	0	0	copy fasta	KREMEN2	chr16	2959275	2973380
KREMEN2_chr16_2959275_2973380	0/0	c0018	1389	1	1	0	0	0	0	copy fasta	KREMEN2	chr16	2959275	2973380
KRI1_chr19_10548085_10571010	0/0	c0001	2112	96	6	9	81	0	0	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	c0002	2112	71	6	20	19	8	18	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/1	c0003	2112	64	34	7	7	4	11	copy fasta	KRI1	chr19	10548085	10571010
KRI1_chr19_10548085_10571010	0/0	c0004	2112	51	2	15	25	1	8	copy fasta	KRI1	chr19	10548085	10571010